BAC Information

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BAC

Clone NameMSMg01-428K04
Chromosome8 (Build37)
Map Location 77,385,748 - 77,386,297
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666146
Downstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229, 1700007B14Rik, LOC666036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428K04.T7 (MSMg01no428_k04.b1)MSMg01-428K04.TJ (MSMg01no428_k04.g1)
ACCAG521555AG521556
length743746
length of high quality
(start - end)
243 (78 - 320)547 (81 - 627)
definitionCHROMAT_FILE: MSMg01no428_k04.b1 PHD_FILE: MSMg01no428_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:52 2005CHROMAT_FILE: MSMg01no428_k04.g1 PHD_FILE: MSMg01no428_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCGTACGGAGGCGCG
GAATTCCAAATGCTACATAAATACGCAGAAACTGTCTGCAGTGGGCAAAA
TCACACCTCAGCTAGAACATGAGGCAAATCATAGTCAGCTGCTGTGGACA
AACTGAAGTAGCCTCATATCCCACACCTGAGATTAAACAAAAACATATTC
TTATAATATTTCTGTTTTTCATGAAATCAAAACTCTGAAATTGTCATTGC
ACTTCTCATGCCTTATTAACTCCACAGCAGTGGCCCTCTTCTGTGGCCCA
CTTCTGTGGCTGTTTTTTTTAATGNTTAGGAAGTCTGCCTTCTTTCTCTG
GAGCTCTCACCTAGGAATCTACCATATATTTCTTTTTAAAACTTACCGCC
TGTAGCCACACATACTGGTGCATGCCTTTAATCCCAACACTCAGGAGGCA
GAGGCAGGTAGATCTCTGCATTTGGGCTGGCCTAATCGACAAAGGAAGCT
CCAAGACAGCTAGGGCTACACAGAGATACCTTGTCTCCAAAATCAAATCA
TACCAACAAACAAACAAACAAACAAACAAACATATCCCCAAACAAACCAT
AAAACCAAGCCTGATCCCCTGTGATATGTGAACTTTATTCTTTGAATATG
CGAGGTTTGACTATTTGTCACTGACTTAGCATAAGCTTCTTGTGATCATG
ATTGCCTGTGCCCCTTACTCCTGCAGTTAATGCCTTCCCCAAT
GGACGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGACCCCCAATACCCATGTAGA
CAGCCAGGCATCCTAACACTGAGGAGGCAAACACAGGAATATTGCTGGGG
TCTGCTGGCCACCTAGTCTGGTCAAACTAGTGACCTCCAGTTTCAATGAT
ATTCCCTGTCTAAAGGTATAAAGTGGAGCGTATTCAGAAAGATACGTAAC
ATCAACCCCTGCCCCCCCCACACACACACACACTACTTATGAGAACACCT
ATAAAAATTCCTGTGAGAATAAGTGTGTGAAATATGACCACACCCTCGAG
AATCTGTGGATGTCTGGGAAATACCTTGAAGGATATCAGCGAGAACGCAC
ATGACTGAGAACAACCCTACTGGACTACCTGTGGAAACGCTTACTGCAAT
ACTGGTGAGAGTACATGTGTAGGCACCTGAGGAAAGACACTTTCCTTGAG
GTCATCACTATGGGTTTGATCACAAAAGAAACAACGTGGCAGTGCTTCAA
GCTCAGTCATAGTAATTTCAACTTAAATGTTTTTCAAAGTACATCTTACT
AATCTCCCAAGAAGGACTTAGAAAAGCCCAAGTTCTGCACCCGTAAGATG
CCTAACATTAAGCCAATATAGCCTCCTGGTGAGTCCCCTGGCTGGCTTAT
CAGGAAAATGTAACCTAAATGGCTAAATGAATTAAGGCAATCGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_k04.g1 MSMg01no428_k04.g1 CHROMAT_FILE:
MSMg01no428_k04.g1 PHD_FILE: MSMg01no428_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:52 2005
         (547 letters)



>mm_chr8_77385551_77386497
          Length = 947

 Score = 1033 bits (534), Expect = 0.0
 Identities = 545/550 (99%), Gaps = 3/550 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acccccaatacccatgtagacagccaggcatcctaacactgaggaggcaaacacaggaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 acccccaatacccatgtagacagccaggcatcctaacactgaggaggcaaacacaggaat 257

                                                                       
Query: 61  attgctggggtctgctggccacctagtctggtcaaactagtgacctccagtttcaatgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 attgctggggtctgctggccacctagtctggtcaaactagtgacctccagtttcaatgat 317

                                                                       
Query: 121 attccctgtctaaaggtataaagtggagcgtattcagaaagatacgtaacatcaacccct 180
           |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 318 attccctgtctaaaggtataaagtggagtgtattcagaaagatatgtaacatcaacccct 377

                                                                       
Query: 181 gcccccccc---acacacacacacactacttatgagaacacctataaaaattcctgtgag 237
           |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gcccccccccccacacacacacacactacttatgagaacacctataaaaattcctgtgag 437

                                                                       
Query: 238 aataagtgtgtgaaatatgaccacaccctcgagaatctgtggatgtctgggaaatacctt 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aataagtgtgtgaaatatgaccacaccctcgagaatctgtggatgtctgggaaatacctt 497

                                                                       
Query: 298 gaaggatatcagcgagaacgcacatgactgagaacaaccctactggactacctgtggaaa 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gaaggatatcagcgagaacgcacatgactgagaacaaccctactggactacctgtggaaa 557

                                                                       
Query: 358 cgcttactgcaatactggtgagagtacatgtgtaggcacctgaggaaagacactttcctt 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cgcttactgcaatactggtgagagtacatgtgtaggcacctgaggaaagacactttcctt 617

                                                                       
Query: 418 gaggtcatcactatgggtttgatcacaaaagaaacaacgtggcagtgcttcaagctcagt 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gaggtcatcactatgggtttgatcacaaaagaaacaacgtggcagtgcttcaagctcagt 677

                                                                       
Query: 478 catagtaatttcaacttaaatgtttttcaaagtacatcttactaatctcccaagaaggac 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 catagtaatttcaacttaaatgtttttcaaagtacatcttactaatctcccaagaaggac 737

                     
Query: 538 ttagaaaagc 547
           ||||||||||
Sbjct: 738 ttagaaaagc 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)