XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AATACTTCAGTTATGAGTCCAATTTCAATAAGGTCTATCAGTGATGTGAG
CTTTTTCTCCCATCCCGGCAAGACTGTATCCACTTCATTTCCTGGAAAGC
AAAAGGACTTTATTTGTTTGCATACCTTAAAGTCAGAAGGCCTTCTCAAT
TTTCTCAAAACACAGACCCAAATTTCTTTTCATAAAATCAATTTTAAACA
GATATACACTTAAATTTAATGGCAACTGCAATGGAGATAAAAGAAAGAAA
AAAAAAGTGAATCCTGCTGGAAATCCCGAGAGAAATTATTAAGGACTCAT
ACCATACCTAAACAATGAGAATGAGAGAATAAATATTATAACTTCAATTA
AAAATAGAGTGTTTAATGGGCTGTAAAGGGAAGTGGGAATTAGCGGGCTC
ATAGATTTCAAATTCCGGAGTTAAATCTATAATATCTGTTTGCCTTCATA
ATAATTTAGAGTCTACAATTGCCCAGAGGTCACCTTTGAGGAGGCAAAGA
AAAATCAATATATTTCACCATAAGTTAAGATGTGTCTTTTACCTCTATTA
AATATGGCTTTCATGAGTAGAAAGTAACACACACAGATGAACACACACAC
ACACACACACNCNCNCNNNANAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGTCCCGCAGCCGCACTGTGCCACAGTATN

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAAAATCCTTGTCTAGTGACCAGACT
ATGGTAGGTTTTTGGTTACCTGTATTTTGTATCTATTAAAACAAATGTTT
ACTGATGTCCTGCAGGAAGTAGCTGGTTCTCAGTATTACATCTACAAAGA
CACATAATGAAGATATTATTCAAGGTGTAGAATGATTCCATGCCATGGGG
TAATGGGTTTGAATCATATTTGTGTGCGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGCGTGTCCTTTTTTTTTTCCCCCCTTTCGCTCCGCCNCTTC
TCCTTTTCTTTTTTTTTTTTTCCCCCTCCCCTGTCGGTTGGTTTGCCTCT
TTTCTCCCTCCTTTTTTTTCCCTCCCCTCCCTTCCCCTTCTTTCTCCCCC
CCCCCCCTTTCTCCCCTTCTCATTTTTTCTTCTCCCTCCCCCTTTCGCCC
CCTCCTCTTTTTTTCTCCCTCTCCCCCCTCTCCCTCCCCTTTTTTTTTCC
CCTCCTTTTCCTATCCCCTCCCGTCTTCTCCCCCCCTCCCTTCTCCCTTT
TTGTTTTTTTTTTTTTCCCCCCCCTCTCCTTCCCCTTCCTTTCCCTTTTT
TTATTCCCCCCCCCCCCCCCTTTTTTTTTTTTTTCCCCCCTCCCCCCTCC
TTATTTCCTCTTTTTCCCTTTCCCCTCTTCTTTCTTCTCTTTTTTTTTCC
ACTTTTTCCCCTTCCCGCCCCTTTTTCCCTTCTACCCACCCTTCCTTTCC
ACCCCCCCTTTG

Query= MSMg01no429_c16.b1 MSMg01no429_c16.b1 CHROMAT_FILE:
MSMg01no429_c16.b1 PHD_FILE: MSMg01no429_c16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:33 2005
         (599 letters)



>mm_chr8_99411280_99412278
          Length = 999

 Score = 1135 bits (587), Expect = 0.0
 Identities = 596/599 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatgagtccaatttcaataaggtctatcagtgatgtgagctttttctcccatcccggca 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 ttatgagaccaatttcaataaggtctatcagtgatgtgagctttttctcccatcccggca 707

                                                                       
Query: 61  agactgtatccacttcatttcctggaaagcaaaaggactttatttgtttgcataccttaa 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 706 agactgtatccacttcatttcctggatagcaaaaggactttatttgtttgcataccttaa 647

                                                                       
Query: 121 agtcagaaggccttctcaattttctcaaaacacagacccaaatttcttttcataaaatca 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 646 agtcagaaggccttctcaattttctcaaaacacggacccaaatttcttttcataaaatca 587

                                                                       
Query: 181 attttaaacagatatacacttaaatttaatggcaactgcaatggagataaaagaaagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 attttaaacagatatacacttaaatttaatggcaactgcaatggagataaaagaaagaaa 527

                                                                       
Query: 241 aaaaaagtgaatcctgctggaaatcccgagagaaattattaaggactcataccataccta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 aaaaaagtgaatcctgctggaaatcccgagagaaattattaaggactcataccataccta 467

                                                                       
Query: 301 aacaatgagaatgagagaataaatattataacttcaattaaaaatagagtgtttaatggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 aacaatgagaatgagagaataaatattataacttcaattaaaaatagagtgtttaatggg 407

                                                                       
Query: 361 ctgtaaagggaagtgggaattagcgggctcatagatttcaaattccggagttaaatctat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ctgtaaagggaagtgggaattagcgggctcatagatttcaaattccggagttaaatctat 347

                                                                       
Query: 421 aatatctgtttgccttcataataatttagagtctacaattgcccagaggtcacctttgag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aatatctgtttgccttcataataatttagagtctacaattgcccagaggtcacctttgag 287

                                                                       
Query: 481 gaggcaaagaaaaatcaatatatttcaccataagttaagatgtgtcttttacctctatta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gaggcaaagaaaaatcaatatatttcaccataagttaagatgtgtcttttacctctatta 227

                                                                      
Query: 541 aatatggctttcatgagtagaaagtaacacacacagatgaacacacacacacacacaca 599
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 aatatggctttcatgagtagaaagtaacacacacagatgaacacacacacacacacaca 168


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no429_c16.g1 MSMg01no429_c16.g1 CHROMAT_FILE:
MSMg01no429_c16.g1 PHD_FILE: MSMg01no429_c16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:34 2005
         (239 letters)



>mm_chr8_99250646_99251284
          Length = 639

 Score =  429 bits (222), Expect = e-125
 Identities = 228/230 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaaatccttgtctagtgaccagactatggtaggtttttggttacctgtattttgtatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaaatccttgtctagtgaccagactatggtaggtttttggttacctgtattttgtatct 260

                                                                       
Query: 61  attaaaacaaatgtttactgatgtcctgcaggaagtagctggttctcagtattacatcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attaaaacaaatgtttactgatgtcctgcaggaagtagctggttctcagtattacatcta 320

                                                                       
Query: 121 caaagacacataatgaagatattattcaaggtgtagaatgattccatgccatggggtaat 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaagacacataattaagatattattcaaggtgtagaatgattccatgccatggggtaat 380

                                                             
Query: 181 gggtttgaatcatatttgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtg 230
           |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 gggtttgaatcatatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)