BAC Information

Click to search

BAC

Clone NameMSMg01-429D01
Chromosome8 (Build37)
Map Location 113,676,494 - 113,677,113
singlet/doubletsinglet
Overlap genenone
Upstream geneCalb2, BC025546, Hydin, LOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik
Downstream geneGlg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429D01.T7 (MSMg01no429_d01.b1)MSMg01-429D01.TJ (MSMg01no429_d01.g1)
ACCAG521977AG521978
length735865
length of high quality
(start - end)
619 (42 - 660)---
definitionCHROMAT_FILE: MSMg01no429_d01.b1 PHD_FILE: MSMg01no429_d01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:35 2005CHROMAT_FILE: MSMg01no429_d01.g1 PHD_FILE: MSMg01no429_d01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCCTGA
TTTGAGGACACACAGGCCCTCAAGTTCCTCAGCCTTTCCTCTGTCACCCT
TGTCTTTTCTCAGCCCCTCGGCTCTAGTGACAGCTGATGACCTGAACAGA
AGCAGGTCTGAGGAGAGGCCCTGGGCCCAGCCGACTGCTTCCACACAACC
ATCAAGTGACACACAGACACAGTTATGCAAGAGTTGCCTGCTACCAGATA
TACTCCTTAGGCTGCTAACGCTGAATACCTAGATGCTCTGAGGAGAACAG
GAGGGTCAGAGGTGAGGACCCAGGAAGGACATCCAGGGACCATGGCTGGC
TAGGCCGTGAAGAGAGAGAGGGGGTTGATGAAGGGGATGACAACGGTTGA
GTCGGGCAGCGGCTGCAGGGCCATGCTAGGCATGTGTGGGATACCCAGGA
GAGGAGGCACGCCTGTGCCCTCTCCAGGACAGAGCCTTACACACATGGGA
AGAATGAGTAATTCAGGAAAAAGCAGCCCCTCTCAAGAAACCCACGATGT
ACCTCCCAACTTGCTGCAGATCCCTGTAAAGGGGCTGCAGGTTCCCTTCC
AAGTCCTGAAGTCTCACCTTGCTGGGCCCCAAAAAGCCAGGATCCGAGGA
CCCCATCGGCAAGGCCTGTGTCTAAGTTGGCTCACAGCTCTATAAACTTA
TAAACTTTGCAGGCTAAGAGACTCCCTCCACTTAT
CCCTTTCTTGAGCCCCGNNGGNGCCCCATTTCAAAACAGCCGGGGNNNNC
CCGAATTCATCACCAGCGGGGGNNNNNGGNGGGGNNNNNNNNGGGNGCNN
CNNNNTTTTTCCCCAAAACACAAACAAACAAGCCCCCCCCCCCCTTTTCT
TCTTCAGGAGAAGAGGGACACATTCCCACACTCCGACCCGCCAAACAACA
CTTATCATCCCCCCCTCCCCCTTCCCCTAACCCTCATATCTTTTTTACAT
AACACCCCCCCCTACCCCCACGCCCTCTCAATTCCTACCAAACACCCCCT
TTATTGCTCCCCCCCCTTTTTTTTTTTTTTCAAAACCCCAAANGGCCCCC
CCCCCCCCAAGGCCCCCTTTTTCCCCCCCCCCCCCACTACGCGCCAGGGG
GGGGAGATTCTCCTCCCCCTTTTCCCTACCCCCCCCCTAATAATTATACC
CCCACACCCCCTTTCCCCCCCCCCCCCCATTTTTTCCCCCCCCCCCCTTT
CCCCTCTCCCCCTTCCTTCTCTCTTCTTCTCCCTTTTCTTATCCCCCCTT
CCCCTCCCCCTTCCACCTTTTCTTTTTCACCTTACTTCCACCTTCCACTC
GACCTTTTATACATTCGCCCATACCTCCATATTCTTTTTTTTAACACCAC
CCCTATCTACCCTAACCCATTCTCCAAAACACAAATAAACCATATTTTTC
CCCATTCTATTCCCCCTCTCACCCCCCGCCCCGTTCTCACAATCCCAAAT
GCGACCCACCAGCACACAATTCCCCCTCCACCCTTATTAACCACACACCA
CCCCAATACCCCACCCCCCTCAACACTAATACATCAAACGCCGCATACAT
ACATATACCTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_d01.b1 MSMg01no429_d01.b1 CHROMAT_FILE:
MSMg01no429_d01.b1 PHD_FILE: MSMg01no429_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:35 2005
         (619 letters)



>mm_chr8_113676294_113677313
          Length = 1020

 Score = 1152 bits (596), Expect = 0.0
 Identities = 614/620 (99%), Gaps = 1/620 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcctgatttgaggacacacaggccctcaagttcctcagcctttcctctgtcaccctt 60
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcctgaggtgaggacacacaggccctcaagttcctcagcctttcctctgtcaccctt 260

                                                                       
Query: 61  gtcttttctcagcccctcggctctagtgacagctgatgacctgaacagaagcaggtctga 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcttttctcagcccctcggctccagtgacagctgatgacctgaacagaagcaggtctga 320

                                                                       
Query: 121 ggagaggccctgggcccagccgactgcttccacacaaccatcaagtgacacacagacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagaggccctgggcccagccgactgcttccacacaaccatcaagtgacacacagacaca 380

                                                                       
Query: 181 gttatgcaagagttgcctgctaccagatatactccttaggctgctaacgctgaataccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttatgcaagagttgcctgctaccagatatactccttaggctgctaacgctgaataccta 440

                                                                       
Query: 241 gatgctctgaggagaacaggagggtcagaggtgaggacccaggaaggacatccagggacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 gatgctctgaggagaacaggagggtcagaggtgaggacccaggaaggacatccagggact 500

                                                                       
Query: 301 atggctggctaggcc-gtgaagagagagagggggttgatgaaggggatgacaacggttga 359
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atggctggctaggccagtgaagagagagagggggttgatgaaggggatgacaacggttga 560

                                                                       
Query: 360 gtcgggcagcggctgcagggccatgctaggcatgtgtgggatacccaggagaggaggcac 419
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcgggcagcggctacagggccatgctaggcatgtgtgggatacccaggagaggaggcac 620

                                                                       
Query: 420 gcctgtgccctctccaggacagagccttacacacatgggaagaatgagtaattcaggaaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcctgtgccctctccaggacagagccttacacacatgggaagaatgagtaattcaggaaa 680

                                                                       
Query: 480 aagcagcccctctcaagaaacccacgatgtacctcccaacttgctgcagatccctgtaaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagcagcccctctcaagaaacccacgatgtacctcccaacttgctgcagatccctgtaaa 740

                                                                       
Query: 540 ggggctgcaggttcccttccaagtcctgaagtctcaccttgctgggccccaaaaagccag 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggggctgcaggttcccttccaagtcctgaagtctcaccttgctgggccccaaaaagccag 800

                               
Query: 600 gatccgaggaccccatcggc 619
           ||||||||||||||||||||
Sbjct: 801 gatccgaggaccccatcggc 820


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1020
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1010
Effective search space:   615090
Effective search space used:   615090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)