BAC Information

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BAC

Clone NameMSMg01-429G24
Chromosome8 (Build37)
Map Location 12,069,789 - 12,070,155
singlet/doubletsinglet
Overlap genenone
Upstream geneCol4a1, Col4a2, Rab20, 0710008K08Rik, Cars2, Ing1, Ankrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik, LOC100040155
Downstream geneLOC100040175, EG434280, EG434279, Sox1, 1700094C09Rik, Tubgcp3, Atp11a, LOC100040229, Mcf2l, F7, F10, Proz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429G24.T7 (MSMg01no429_g24.b1)MSMg01-429G24.TJ (MSMg01no429_g24.g1)
ACCAG522166AG522167
length763765
length of high quality
(start - end)
429 (61 - 489)382 (76 - 457)
definitionCHROMAT_FILE: MSMg01no429_g24.b1 PHD_FILE: MSMg01no429_g24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:55 2005CHROMAT_FILE: MSMg01no429_g24.g1 PHD_FILE: MSMg01no429_g24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCACCGCNGGAANCAGAGA
TCTTCCCGGCTCTTGTCTCCTGAATGCTGGGATCAAAGACTTTTACCACC
ACACCTAGACTTAACTTTTTTTTTTTTCTACTAGGAAATTGCTCTATACC
AGGCTGGCTTTGAACTCAGAGATCAGCTTGGCTCCTGGAATTAAAGACAT
GTACGACCATGCTTGGATCTAAGTTTAGCTGGGTGGGATCTTGCCCCAAA
GTCACCACTCCCTTAATCTGCTTATATCCTTGAACACAGGATTTCACTCC
GTTTCACTTCCTGGTGCCCTGGAATTCTTTGAACCATACATTATATATCT
ATTCCTTTCTCAGCTTGCTCCTTTTCTTCCTTCCTTCCTTCCTTCCTTCC
TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTCCTT
CCTTCCTTCCTTCCTCCCCTCCCCTCCTTTCTTTTTGTTTTTTTCGAGAC
AGGGTTTCTCTGTGTAGCCCTGCCTGTCCTGGTAACTCCTCTGAAGACCA
AGCCGGCCTTGAACTCATAAATCCCCCTGCCTCTGCCCCCCAAGGGGTGG
AAATAAAGGGATGGACCCCCCACTGCCCCGGCATTCCCTTTTCTTAAAAT
GCCCCTTCCCCAAATTCACCCTCAATACACTGCCTGGGCTGGTCTTTTTT
TCCAAATTTCTTTTCTCATGGCCATAGATTATCCCCCTAATTTACCTTCT
GACCCGGCTTAAC
GAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCATCTTGTAAAGCTGAGCAGGGC
AGGGCTGAGCAAATGCAGCCTCCCTATCGGGATTTGTCGTCCAATAAGAA
GAAAAGAGTGTAAAATTCCAGCAATAAAAAATGAATAAAAGATTGGAGAT
CTAGACTTGCTTGGGTTTTTTTACCCTCATAGACCTGATACACTAGAGCT
ACCATGTTACCTATAATGTGGGATTCTTACTTTTTTTTAACCTAAAAACA
CCTCCTTTGGGTAATGACAAATGTTGGTTCTGTTTGTTTATTTGGACCTA
TTTTTAAATATACCTTTAAAGGTTTTTACATTGTTTCATGTTGGTCAATT
TGAGATTTTTTAAATTTGCAATAAAAGCTTATGACTTGAAGGTTTTTCTT
TTGGAAAAAAAAGTCCAGACTGTTAATAAAAGTCCTCCTCCCCCTTCATC
ATCATCATTATTACCACCCCCACCATCATCTTCTACTCCTGCACCGCCCC
CCTTGGTTTGTCTCTTCCCCTGGACTCTGTGAATTAACTAAACTATTTTT
TTACCCCCCCCCCCCCTTTTTTTTTTTTTCCCCCCCCCCCCTCCTTTTTC
TCCTCTGGCCGTATACCGTTTTTCTTCTCTTGTCCCAATGTTCCCCCCTC
TCTCTCCCCTCCACCCCTCCTTTTCCACTCCCCCCCCACCTTCCCTTTTC
CTCCCCCCCCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_g24.g1 MSMg01no429_g24.g1 CHROMAT_FILE:
MSMg01no429_g24.g1 PHD_FILE: MSMg01no429_g24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:56 2005
         (382 letters)



>mm_chr8_12069589_12070368
          Length = 780

 Score =  615 bits (318), Expect = e-180
 Identities = 357/370 (96%), Gaps = 4/370 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcatcttgtaaagctgagcagggcagggctgagcaaatgcagcctccctatcgggattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 567 atcatcttgtaaagctgagcagggcagggctgagcaaatgcagcctccctatcgggattg 508

                                                                       
Query: 61  gtcgtccaa-taagaagaaaagagtgtaaaattccagcaataaaaaatgaataaaagatt 119
           ||| ||||| | |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gtcatccaact-agaagaaaggagtgtaaaattccagcaataaaaaatgaataaaagatt 449

                                                                       
Query: 120 ggagatctagacttgcttgggtttttttaccctcatagacctgatacactagagctacca 179
           ||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||
Sbjct: 448 ggagatctagacttgcttggg-ttttttccccccatagacctgatacactagagctacca 390

                                                                       
Query: 180 tgttacctataatgtgggattcttacttttttttaacctaaaaacacctcctttgggtaa 239
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 389 tgttacctataatgtgggattcttactttttttt-acctaaaaacacctcctttgggtaa 331

                                                                       
Query: 240 tgacaaatgttggttctgtttgtttatttggacctatttttaaatatacctttaaaggtt 299
            |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 330 cgacaaatggtggttctgtttgtttatttggatctatttttaaatatacctttaaaggtt 271

                                                                       
Query: 300 tttacattgtttcatgttggtcaatttgagattttttaaatttgcaataaaagcttatga 359
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 270 tttacattgtttcatgttggtcaatttgagattttttaaatttgtaataaaagcttatga 211

                     
Query: 360 cttgaaggtt 369
           ||||||||||
Sbjct: 210 cttgaaggtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 780
Length adjustment: 9
Effective length of query: 373
Effective length of database: 771
Effective search space:   287583
Effective search space used:   287583
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)