BAC Information

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BAC

Clone NameMSMg01-429K10
Chromosome8 (Build37)
Map Location 93,974,406 - 94,093,081
singlet/doubletdoublet
Overlap geneAJ237917
Upstream geneLOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l
Downstream geneLOC100041254, LOC674324, LOC100040628, Irx3, 4933436C20Rik, Irx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429K10.T7 (MSMg01no429_k10.b1)MSMg01-429K10.TJ (MSMg01no429_k10.g1)
ACCAG522329AG522330
length734748
length of high quality
(start - end)
522 (68 - 589)413 (76 - 488)
definitionCHROMAT_FILE: MSMg01no429_k10.b1 PHD_FILE: MSMg01no429_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:12 2005CHROMAT_FILE: MSMg01no429_k10.g1 PHD_FILE: MSMg01no429_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,092,564 - 94,093,081)(93,974,406 - 93,974,818)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ATAGTTTACACATACACAAGGCTCAACCTCCTCTGCTGTGCCCAAAAGGC
CTCTGGAAAAAATGAATATTTATTTTGTTTTGTTTTTTCAAGACAGGGTT
TCTCTGTGTAGCCCTGGATGTCCTAGAACTCACTCTGTAGACCAGGCTGG
CCTCCAGTCCAAAGATTCACCTGCCTCTGCTTCCCCAGAGCTGGGACTGA
AGGTGTGTAAGAACACTGCCCACCATGAGTATCTATTGTAATAAGAAGAA
AGAAAACTGACTTGGTGGGAAGCTATATTAATTCACTGGAAATTCAATAA
ATGGCCCCAGAAGGAAAGAGTCAGTATTTGCATCTGCTATGTCTACTTTC
CATGGGGAAAGATCACGGTGACTCTCAGCTTAACACTAACCCATGAGAAG
AAGGTGAGATGCCCGAAACTCGGCAGGCCAGAGCTTCTTCCACCCGGCCT
TAGCAACCTTCACTGCTGCAGAACTGTGAAAAATGGCCCCACCTACCCAA
ACTTTGGTGGTCTCATCTATAAGACAGGCAGAACAGCCTGCAGGTCCAAA
GGAAGACTCAACGTATGCTACTGTCTGCTGTAGGACACGGTACTAAGGAT
GCCTTAGCTAATTTCCTTTGCTGTGATAAAATGCCAGACCAGAAACACCT
GGGGAGGGGAGGGTTTGTCTCATCCTACCCTTCC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCCTAGACAAATACAAGATATAG
GCATTCAAAAAACTACAACTCAAAAATCTCTAATAAAGAAATTGTGTTAC
ATAAATAAGTAACTTAAATTTCTTCAGTAATTTCAGAGACAAAGTATTAT
CTTGTATAAATTAATAATTCTCATAAAAATTCAGAGACAACGTATTAAAA
ACCAGTATTGCTGGCTATAATAATGGATATCCACTATGGAGGCTCTGAGA
GGCACAGATTGTGAGTGGAGAAACTGAGGCCTGGTGTCCTTGTGGTGTGT
TATTAACTTAACTAGACTGGACTGTGGATGCTGTAAATTACACAGGCCCC
AGAGTAAGCAGGAACCATGTAGTGGATACACAAAGGGTAGGGACAGAGGA
GTCAAAGCGCATCACTGTCGACGAGTGACTGTGTCGTATAGGCCAGAACA
AGAGGAGGAAAGCAAAAGGGCCAACATAACGNCATGAAAGATGGGAGTAA
GTCAATGGGATTCAGCTCTGTAATCATGTCCAGTTATAGAGTTGCTCGCA
TGGATTTCCCTAAAAAACAAACCCCCTCCCAGGAAGCTCTGGCTTTAGCC
ACCCAGGCCCATTATAACCATTGGGAGGCCCCTGAAACCCCCTGGGGGGG
GCTTAATCCCGATATTTCCCTTACATACCTTGTGCACCCCCACCAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_k10.b1 MSMg01no429_k10.b1 CHROMAT_FILE:
MSMg01no429_k10.b1 PHD_FILE: MSMg01no429_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:12 2005
         (522 letters)



>mm_chr8_94092160_94093081
          Length = 922

 Score =  986 bits (510), Expect = 0.0
 Identities = 516/518 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   ctcaacctcctctgctgtgcccaaaaggcctctggaaaaaatgaatatttattttgtttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 ctcaacctcctctgctgtgcccaaaaggcctctggaaaaaatgaatatttattttgtttt 863

                                                                       
Query: 65  gttttttcaagacagggtttctctgtgtagccctggatgtcctagaactcactctgtaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gttttttcaagacagggtttctctgtgtagccctggatgtcctagaactcactctgtaga 803

                                                                       
Query: 125 ccaggctggcctccagtccaaagattcacctgcctctgcttccccagagctgggactgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ccaggctggcctccagtccaaagattcacctgcctctgcttccccagagctgggactgaa 743

                                                                       
Query: 185 ggtgtgtaagaacactgcccaccatgagtatctattgtaataagaagaaagaaaactgac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ggtgtgtaagaacactgcccaccatgagtatctattgtaataagaagaaagaaaactgac 683

                                                                       
Query: 245 ttggtgggaagctatattaattcactggaaattcaataaatggccccagaaggaaagagt 304
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aaggtgggaagctatattaattcactggaaattcaataaatggccccagaaggaaagagt 623

                                                                       
Query: 305 cagtatttgcatctgctatgtctactttccatggggaaagatcacggtgactctcagctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cagtatttgcatctgctatgtctactttccatggggaaagatcacggtgactctcagctt 563

                                                                       
Query: 365 aacactaacccatgagaagaaggtgagatgcccgaaactcggcaggccagagcttcttcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aacactaacccatgagaagaaggtgagatgcccgaaactcggcaggccagagcttcttcc 503

                                                                       
Query: 425 acccggccttagcaaccttcactgctgcagaactgtgaaaaatggccccacctacccaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 acccggccttagcaaccttcactgctgcagaactgtgaaaaatggccccacctacccaaa 443

                                                 
Query: 485 ctttggtggtctcatctataagacaggcagaacagcct 522
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctttggtggtctcatctataagacaggcagaacagcct 405


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no429_k10.g1 MSMg01no429_k10.g1 CHROMAT_FILE:
MSMg01no429_k10.g1 PHD_FILE: MSMg01no429_k10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:12 2005
         (413 letters)



>mm_chr8_93974206_93975018
          Length = 813

 Score =  783 bits (405), Expect = 0.0
 Identities = 411/413 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcctagacaaatacaagatataggcattcaaaaaactacaactcaaaaatctctaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcctagacaaatacaagatataggcattcaaaaaactacaactcaaaaatctctaata 260

                                                                       
Query: 61  aagaaattgtgttacataaataagtaacttaaatttcttcagtaatttcagagacaaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaaattgtgttacataaataagtaacttaaatttcttcagtaatttcagagacaaagt 320

                                                                       
Query: 121 attatcttgtataaattaataattctcataaaaattcagagacaacgtattaaaaaccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attatcttgtataaattaataattctcataaaaattcagagacaacgtattaaaaaccag 380

                                                                       
Query: 181 tattgctggctataataatggatatccactatggaggctctgagaggcacagattgtgag 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattgctggctataataatggacatccactatggaggctctgagaggcacagattgtgag 440

                                                                       
Query: 241 tggagaaactgaggcctggtgtccttgtggtgtgttattaacttaactagactggactgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggagaaactgaggcctggtgtccttgtggtgtgttattaacttaactagactggactgt 500

                                                                       
Query: 301 ggatgctgtaaattacacaggccccagagtaagcaggaaccatgtagtggatacacaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggatgctgtaaattacacaggccccagagtaagcaggaaccatgtagtggatacacaaag 560

                                                                
Query: 361 ggtagggacagaggagtcaaagcgcatcactgtcgacgagtgactgtgtcgta 413
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 ggtagggacagaggagtcaaagcgcatcactgtcggcgagtgactgtgtcgta 613


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)