XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAGA
CCTTCCCTGAACAATTTCCCCTGAGGACAGTCCATATTAAGCCCCTAAAC
AGAGATAGGATTTTTTCATTACCTTTTAAGGATAGCAGGAAGTTTCACAT
CACCAGATTTGGTTTAACACAGTGTATGTAACAAAAAGCACAGAGGAGCC
AGATACCATAAATTGGAGCTGTCAAATCATAGCACAAACTACTTAACTCT
CTGTCACAGAGAGTGAGGCCAAGAGCTATGATTTGATTCCGGCTGGAAAA
CTTACCTAAAGGAGCAGGCTCATATTTTGACAAACACATTGCTCTGTATT
TTATTTCAGTGACTTCAAACAGAGTAGTTCTATTTTCATTTTTAACAAGT
GGTATATTGATATATTGAATGCATTAAAATTAAAAGTTCCAACAAGTAAA
ATAGAAAAGCAAAAGCAAAAGAGTAATTTTTACTAACAACAGGCCAGGAA
TCACTGTTACTGCCTTCATCTTGCTAGGTGTTTTTTCAAGATTCATGTTA
GCACTGTTTATATTGATGAAAAGATATCTCTTTACACTGCTTTGGATTTG
CTTCTTCTATTAAGGAGACCTAGAGAGTATGTGTTCCTGCCCGCCAATAC
TATATATAGCACCCTGTGAAGAAGCCTCTCAAGTTCCCTTATAGAACAAG
GTGTACTTTCTCAGGGCCCTAGGTCAGAATTTCAAGGCCTTGCAATTTTT
GGCCCTAAAA

NCCCCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACATTGCTAAGTTTAAAATC
ACTCCACAATCATTTACACTAACAAGAAAGTTGTTGTTGTTGTTGTTGTT
TTAATGCAGAAGAGATAATAAAGGAGAATGGATTTAAATCACTCCAGAAA
AAGAAAGCTCAGAATCCTAGTAATAATGATGGTAACGGACTATTAGCCAT
TGATTACAGTAAGAACCTCATTAATTTATGTACATGTAAATAAATAAAAC
ACTAGTATGTTATGAAAATATGTTACTATTTCTAGAAAAGTGACAACTAA
TAAATGTAATAGAATGGCTCAGGGAAGGCTGTAGAGGAGAAGGCAAAACC
AGTATAAGTGGAATGGAGGAGAACAAGAAAACCATGCCTTCTAAATAATC
ATTATCAACGCTCGTATGAATTCACAGAGACAGAAGCAACAGCCTAGGGC
CTTCATGAGTCTGTACCAGGTCTTCTGTGCATATACTATGGCTTCCCAGT
TAGTGTTATTATGGGGATGGATGCCTCGACGCGCAAACAAAATGGGCCTC
CGATCCTTGTATCCTTTTCTGCGGTCCTTCTGGCTGTCTTCCCCAATTCC
CAAATAGAAAAATTTTGTTTTCTTTTAACCCGGGCGTTCTCCCCCCTTAT
ATTTATTCTCCCCCGTCGTCTTGTCCTCCG

Query= MSMg01no429_n17.b1 MSMg01no429_n17.b1 CHROMAT_FILE:
MSMg01no429_n17.b1 PHD_FILE: MSMg01no429_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:28 2005
         (493 letters)



>mm_chr8_58929896_58930789
          Length = 894

 Score =  901 bits (466), Expect = 0.0
 Identities = 484/490 (98%), Gaps = 1/490 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagagaccttccctgaac-aatttcccctgaggacagtccatattaagcccctaa 63
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 694 gaattcagagaccttccctgaacaaatttcccctgaggacagtccatattaagcccctaa 635

                                                                       
Query: 64  acagagataggattttttcattaccttttaaggatagcaggaagtttcacatcaccagat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 acagagataggattttttcattaccttttaaggatagcaggaagtttcacatcaccagat 575

                                                                       
Query: 124 ttggtttaacacagtgtatgtaacaaaaagcacagaggagccagataccataaattggag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ttggtttaacacagtgtatgtaacaaaaagcacagaggagccagataccataaattggag 515

                                                                       
Query: 184 ctgtcaaatcatagcacaaactacttaactctctgtcacagagagtgaggccaagagcta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ctgtcaaatcatagcacaaactacttaactctctgtcacagagagtgaggccaagagcta 455

                                                                       
Query: 244 tgatttgattccggctggaaaacttacctaaaggagcaggctcatattttgacaaacaca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tgatttgattccggctggaaaacttacctaaaggagcaggctcatattttgacaaacaca 395

                                                                       
Query: 304 ttgctctgtattttatttcagtgacttcaaacagagtagttctattttcatttttaacaa 363
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 394 ttgctctgtattttatttcagtgacttcaaacagagtagttttattttcatttttaacaa 335

                                                                       
Query: 364 gtggtatattgatatattgaatgcattaaaattaaaagttccaacaagtaaaatagaaaa 423
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 334 gtggtatattgatatattgaatgcattaaaattaaaagttccaataagtaaaatagaaaa 275

                                                                       
Query: 424 gcaaaagcaaaagagtaatttttactaacaacaggccaggaatcactgttactgccttca 483
            | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 274 acgaaagcaaaagagtaatttttactaacaacagaccaggaatcactgttactgccttca 215

                     
Query: 484 tcttgctagg 493
           ||||||||||
Sbjct: 214 tcttgctagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 894
Length adjustment: 10
Effective length of query: 483
Effective length of database: 884
Effective search space:   426972
Effective search space used:   426972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)