BAC Information

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BAC

Clone NameMSMg01-429O12
Chromosome8 (Build37)
Map Location 67,123,531 - 67,123,778
singlet/doubletsinglet
Overlap geneCpe
Upstream geneLOC384831, EG244495, Tll1, LOC100040989
Downstream geneSc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429O12.T7 (MSMg01no429_o12.b1)MSMg01-429O12.TJ (MSMg01no429_o12.g1)
ACCAG522525AG522526
length736735
length of high quality
(start - end)
239 (63 - 301)240 (73 - 312)
definitionCHROMAT_FILE: MSMg01no429_o12.b1 PHD_FILE: MSMg01no429_o12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:31 2005CHROMAT_FILE: MSMg01no429_o12.g1 PHD_FILE: MSMg01no429_o12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXGTCCCAGAGGATCCGCGGAATTCCAGA
ATCGCAAGAAGCATGAGCATCAGTGGCCAAAAGGATGGATGACGAGCCTT
AGCTCACGTCTAGTGCAAAGCTGGTCCCTTTAATGTTGAGTAGCCTGGCG
AGAAGGTGGATCTGATGCCAGTGGGGCCTTCTGACTAAAACGTGTCCTGG
CGTGTTATGAGTGTTGTTTTCACAAGTGTCTGATTTGTAGTCAGCAAGAG
GCTTAAACCTTCAGAGACTCTGGCTCCTGTGATTATGCTTTAGAGGAGAA
ATAATTTTTTTGCCCTCATGTGCCAAGCTCACTGAAGATGGTCTTGGATA
AAGAGCCCTACTTCAGGGCTGAAAGCAACAACCTCCATTGGTAATACCAA
CAGCAGGAACAACACAAAAATAACGTAAAACCCAGTTGCCAGGCAATGTC
TCAAAGGTGGCTTGCATTAAAACTGGGGAAGTGAAATTAGTGGAGGGGAG
AGGCAGCCAGTCTGTTGTTGTTTATTACTCTGATTTCTAAGCCCACAGAA
GGTTTATTTCCTCGTGAAATTGTTAGAAATAAATTATTCCGGGAAGAGCC
ATCTGGGCTCCCTAGTGACAGCTCTCCTCATCTTAGGAACAGTGTGCCTC
ATCAGACGAGTGCAGGCACACCTTTTACATTGTGAATTCTGTTACTTTCA
TGATTCCCTTTCGCCCCCAAACGCCTCACATGCCTC
TGATGCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCCACAAAACCCAAGCTGTTACCAAGAC
AATAGGTTGTTCTCTGAAAACTGACAGTAAGACCATGCTGCTGAAGGCAA
TGCCCACACAACTCATTGCACATAGAGAAGATAAGCTGGAGCCTAAATAG
AGTCTCCACTACCCAAAGAGAAACCCAGCCACAAACACTCTGATCTATAC
AATCTGCCAAATACACTAGGGCAATGGTGACCAACCAATGTCTGATTTGA
CTTAAGGCCGTCTACAATATGTAACTCATACTTGATATGGCTTGGATGAC
CAAGTACCTGAGACTGATAGCCCAGAGACCTGGAGTAAAACCAAAGACTA
ATAGTCTTTTTTTTTAAGTAACAAATGACTCCTAATGACATTCTGCTATA
CTCACAGATCAGTAACTAGCTCAGCCAGCATTCGAGAAGCTTCCTCCTGC
AGCAGATGGGAGTAAATACAGAGACCCACAGCCAGACATTATGCAGCTGT
TGAAACACAAAGCTCTCAACAGGGCAACAAATTTCTTCCCCTCAGAGAAC
GGACCATAATATGAGGCCCAGTGTCATATCCTTAGGATTGAGCGATCCCC
GGATAGTTATGCCCTCAACCTAACTAACTTGAACCAACCCGCCACGTAAT
CCCCCTACACAACGATCTTGTACGCACCCCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_o12.b1 MSMg01no429_o12.b1 CHROMAT_FILE:
MSMg01no429_o12.b1 PHD_FILE: MSMg01no429_o12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:31 2005
         (239 letters)



>mm_chr8_67123247_67123885
          Length = 639

 Score =  402 bits (208), Expect = e-117
 Identities = 235/248 (94%), Gaps = 9/248 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgagcatcagtggccaaaaggatggatgacgagccttagctcacgtctagtgcaaagct 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 532 atgagcatcagtggccaaaaggatggatgacgagccttagctcatgtctagtgcaaagct 473

                                                                       
Query: 61  ggtccctttaatgtt---g-agtagcct-----ggcgagaaggtggatctgatgccagtg 111
           |||||||||||||||   | ||||||||     |||| ||||||||||||||||||||||
Sbjct: 472 ggtccctttaatgttcgcgcagtagcctggctaggcgtgaaggtggatctgatgccagtg 413

                                                                       
Query: 112 gggccttctgactaaaacgtgtcctggcgtgttatgagtgttgttttcacaagtgtctga 171
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gggccttctgactagaacgtgtcctggcgtgttatgagtgttgttttcacaagtgtctga 353

                                                                       
Query: 172 tttgtagtcagcaagaggcttaaaccttcagagactctggctcctgtgattatgctttag 231
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 352 tttgtagtcagcaagaggcttagaccttcagagactctggctcctgtgattatgctttag 293

                   
Query: 232 aggagaaa 239
           ||||||||
Sbjct: 292 aggagaaa 285


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)