BAC Information

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BAC

Clone NameMSMg01-430A02
Chromosome8 (Build37)
Map Location 85,764,491 - 85,920,388
singlet/doubletdoublet
Overlap geneTbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn
Upstream geneIl15, EG666564, LOC675800, EG666289, Zfp330, Rnf150, LOC100039688
Downstream geneScoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430A02.T7 (MSMg01no430_a02.b1)MSMg01-430A02.TJ (MSMg01no430_a02.g1)
ACCAG522601AG522602
length749782
length of high quality
(start - end)
337 (78 - 414)321 (84 - 404)
definitionCHROMAT_FILE: MSMg01no430_a02.b1 PHD_FILE: MSMg01no430_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:39 2005CHROMAT_FILE: MSMg01no430_a02.g1 PHD_FILE: MSMg01no430_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,920,085 - 85,920,388)(85,764,491 - 85,764,811)
sequence
CCTCCCGTTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGA
TCCGCGGAATTCTCTGGTTTCCTTAAACAGAGGCCGGCACAACAGGATGG
ATGATTTCTAGTCTTCACAGTATTAGATGTGAATATACTCAATATGAAGG
CACCAGAGACAAGGTTCTAGAGAGCCACGTGACCTGTGGGTCTCGACTCC
TTGGGGTGGGGCCTGGGGTGGAATGACCCTGTGACAGAGGTCACCGAAGA
GCATGGGAAAGTACAGATACTTCTGTTTCAATTCATAGCAGTAGCAACAT
TACAGTAACGAGGTAGCCAACAACGATAATTGTATGGTTGGGGTCACCAC
AACATGAGGAACTGCATTAAAGGGCTGCAGCATTAGGAAGGCAGAGCACT
GCTCTAGGGAATGGTCAAGGTAGATACAGCAAAGTCTCTGTCAAGTTCCT
TAGTCTCCCGTAAGTCATCTCCTCAGAACGTACACCTACTCAGCACATAG
GCAGAGCCCTGGCTCGGCTCAGTTCAGCTCAAGTCCATGTTGCCACCCTT
CACTGCTCATATCTGCCCACAGACCAATTAGCTTTGAGAACCACACTTTA
TGGTCCCTTCCTTTTTGTCTGGAGAATGCTGTTATTATTACTAATTAACA
ACCTAAGGTCCTTCGTCCTTTGCCTAAACGTTCCCTTGGTCTTTCGTCAC
ATGCCCTCTTGCTTTTGGTTCAATGTGTCCCTGTCCTCCTCATTAAATG
CCTTTTCGCGATGGTATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGTTTATACCACCAG
GCCCAGTTTCAGCCTTTTTAAGTTGGAGATATCATTAAGTGACCTGTTCT
GATTACAGGAAAAGCGACTCCTTTCTATTTAATGACATCAGTAGGAAGGG
TTCCGAAATCAGAACTGAAATATAGCATCACTATGGTGATTCTTCTGTGC
TGGAATGCACAGGCCACCGTCCAAAGAACCCAGACCCCTGGGACGATAAA
CAATCAGCCGGGGTGGCGGAGGAAGTTTCAGTTAGCTAAAGACGGCAAGG
TTGCGGTGACCAACCCTGTCCCTGCTGCCTTGTCACATCTGTAGCATTTT
TGAGAGGCCAGACCCTAGACTGGAGGCATAACAGTCTTCAATAGCTTTCG
CTTCTGCCGTGTCCTGCTTTATTTGGAGCCATATTCTTGATTCGTATAAT
TGTTCTCTTTTATTCTTCCCGTTTACATCGTTTTTGTCCTATCCATATTT
TGCTATAAATCCTTTGTCAATTTCCACGCCTTAATACACTCCCTTTATTT
CCCTTTCTTATTCTCTTCTTCTTATTCCTTCCCTCCTCCTCTTCACTCCC
TTTCCTCTTCTCTTTCTAATTGCTTGCACGTTCCTCTTTCTTCCTTAATA
TCATCCCCTTCTCATATTTTTCTCAATTGCCTTATAATCTTATTTATTTC
CCCCCTTTTCAGCTTTATTCCCCCATCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_a02.b1 MSMg01no430_a02.b1 CHROMAT_FILE:
MSMg01no430_a02.b1 PHD_FILE: MSMg01no430_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:39 2005
         (337 letters)



>mm_chr8_85920085_85920821
          Length = 737

 Score =  549 bits (284), Expect = e-161
 Identities = 299/304 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaggccggcacaacaggatggatgatttctagtcttcacagtattagatgtgaatata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cagaggccggcacaacaggatggatgatttctagtcttcacagtattagatgtgaatata 245

                                                                       
Query: 61  ctcaatatgaaggcaccagagacaaggttctagagagccacgtgacctgtgggtctcgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ctcaatatgaaggcaccagagacaaggttctagagagccacgtgacctgtgggtctcgac 185

                                                                       
Query: 121 tccttggggtggggcctggggtggaatgaccctgtgacagaggtcaccgaagagcatggg 180
           ||||||||||||||||||||||||||||||||| | |||||||||||| |||| ||||||
Sbjct: 184 tccttggggtggggcctggggtggaatgaccctttcacagaggtcacctaagaccatggg 125

                                                                       
Query: 181 aaagtacagatacttctgtttcaattcatagcagtagcaacattacagtaacgaggtagc 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aaaatacagatacttctgtttcaattcatagcagtagcaacattacagtaacgaggtagc 65

                                                                       
Query: 241 caacaacgataattgtatggttggggtcaccacaacatgaggaactgcattaaagggctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  caacaacgataattgtatggttggggtcaccacaacatgaggaactgcattaaagggctg 5

               
Query: 301 cagc 304
           ||||
Sbjct: 4   cagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no430_a02.g1 MSMg01no430_a02.g1 CHROMAT_FILE:
MSMg01no430_a02.g1 PHD_FILE: MSMg01no430_a02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:39 2005
         (321 letters)



>mm_chr8_85764291_85765011
          Length = 721

 Score =  613 bits (317), Expect = e-180
 Identities = 320/321 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggtttataccaccaggcccagtttcagcctttttaagttggagatatcattaagtgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggtttataccaccaggcccagtttcagcctttttaagttggagatatcattaagtgac 260

                                                                       
Query: 61  ctgttctgattacaggaaaagcgactcctttctatttaatgacatcagtaggaagggttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgttctgattacaggaaaagcgactcctttctatttaatgacatcagtaggaagggttc 320

                                                                       
Query: 121 cgaaatcagaactgaaatatagcatcactatggtgattcttctgtgctggaatgcacagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgaaatcagaactgaaatatagcatcactatggtgattcttctgtgctggaatgcacagg 380

                                                                       
Query: 181 ccaccgtccaaagaacccagacccctgggacgataaacaatcagccggggtggcggagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaccgtccaaagaacccagacccctgggacgataaacaatcagccggggtggcggagga 440

                                                                       
Query: 241 agtttcagttagctaaagacggcaaggttgcggtgaccaaccctgtccctgctgccttgt 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 agtttcagttagctaaagacggcaaggttgcggggaccaaccctgtccctgctgccttgt 500

                                
Query: 301 cacatctgtagcatttttgag 321
           |||||||||||||||||||||
Sbjct: 501 cacatctgtagcatttttgag 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)