BAC Information

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BAC

Clone NameMSMg01-430N05
Chromosome8 (Build37)
Map Location 113,786,978 - 113,787,314
singlet/doubletsinglet
Overlap genenone
Upstream geneHydin, LOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1
Downstream geneRfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430N05.T7 (MSMg01no430_n05.b1)MSMg01-430N05.TJ (MSMg01no430_n05.g1)
ACCAG523227AG523228
length791840
length of high quality
(start - end)
354 (76 - 429)337 (85 - 421)
definitionCHROMAT_FILE: MSMg01no430_n05.b1 PHD_FILE: MSMg01no430_n05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:52 2005CHROMAT_FILE: MSMg01no430_n05.g1 PHD_FILE: MSMg01no430_n05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCCCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCAACTGTTCCCAATTGAATGGCTGAGAAGCACCTGAAAA
AATGTTCAACATCCTTAGTCATCAGGGAAATGCAAATCAAAACAACCCTG
AAATCCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGA
CAACAGATGCTGGCGAGGATGTGGAAAAAGAGGAACACTCCTCCACTGCT
GGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGAGGTTC
CTCAGAAAATTGGACATAGTACTATCATAAGATCCAGCAATACCTCTCTT
GGGCATATACCCAGAAGAAGTTCCAACTGGTAATAAGAACACCTGCTCCA
CTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCC
AGATGTTCCTCAACAGAAGAATGTATACTGAATATGCGTTACTTTTACAC
CACGGAAAACCACTCACTCATTATAACCATGGATTTATGCACTCTTTGGA
CCATTGGATGTATATGCAATAACCCATCTTCCTCCGCCGTATACCTTACC
TCTAAACAACGCCTTCAATACGCGACTCCCCGCAAACCCGCCACTTTCCT
CATTCTCCCCTTTACCCATCCTTTCTATATTTCCCTTTTTTTCTTAATTC
CCTCCTATTCCCCATTCCTCATCTCTTCCTATCCTATTTAATCCTTCCCC
CCCCAATCTTATTCTCCCCACCATCTCTTTTTTCCTTCTCN
NTTTCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCGGGAGGCAGAAG
CAGGCAGATTTCTAAGAATTAGCCCAGCCTGGTTTACAGAGAGAGTTCTA
AGACAGCCAGGGCTACCCAGAAAAACCCTGTCTTGAAAAACCAAAAGAGA
AGACAAACAAACAAACGAAACAAAATTAAAGTTCAAGACTCTGAGGAGAT
GGAAACTAGCATCTATGAGGAAGAACTATGTTTGGAAGCACGGGTCCCAG
CTAAGGCTGGATGACTGCAGATTCAAAACTAGGCTAGGCAACGTGTCTGT
AATGAGCGGGAGAGATGGGAAAACCAGAGAACTGGACATGGCTTAGCTCT
TACAGGCATCTAGAAAGTTTAAGAAAGCCACAGCCCAAGTGTGGTAATAG
CAGGGCTGTAAGTTACAGGTATTGTCCTTTCTGAGTGGATTCCCTCTTAC
TTGCTGTCGCTTGTTCTCGAATCTCCTCTTTATTCGTATATTTCCTTTTT
TTTCAATTCTCTTTTTTCCCCTTCTATTTTACCCCCCCCTTTTTTTCTTT
TCCTTTCCCCCTTGTCTTTCGCCCTTATTTTCGTCCCGCTTCGCTCATTC
CTTAATACCTTTTATCTCCTTTTCCTTCTTCCCCTCTTTCTTTCCTTTTC
CCTCTCCCTTCTCCCTTTGTCGTTTCCCAGTTATCCCGCATCTGTTTCTC
TCGCTTTTTCTCCTCTCTCCGATCCTATTGTTGTATTCGTTTTTCCTCCC
TTCCGCTCTCCTTCTCTTGATCTTCATTCCTTTTCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_n05.g1 MSMg01no430_n05.g1 CHROMAT_FILE:
MSMg01no430_n05.g1 PHD_FILE: MSMg01no430_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:52 2005
         (337 letters)



>mm_chr8_113786778_113787514
          Length = 737

 Score =  644 bits (333), Expect = 0.0
 Identities = 336/337 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcgggaggcagaagcaggcagatttctaagaattagcccagcctggtttacagagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcgggaggcagaagcaggcagatttctaagaattagcccagcctggtttacagagaga 260

                                                                       
Query: 61  gttctaagacagccagggctacccagaaaaaccctgtcttgaaaaaccaaaagagaagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttctaagacagccagggctacccagaaaaaccctgtcttgaaaaaccaaaagagaagac 320

                                                                       
Query: 121 aaacaaacaaacgaaacaaaattaaagttcaagactctgaggagatggaaactagcatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacaaacaaacgaaacaaaattaaagttcaagactctgaggagatggaaactagcatct 380

                                                                       
Query: 181 atgaggaagaactatgtttggaagcacgggtcccagctaaggctggatgactgcagattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgaggaagaactatgtttggaagcacgggtcccagctaaggctggatgactgcagattc 440

                                                                       
Query: 241 aaaactaggctaggcaacgtgtctgtaatgagcgggagagatgggaaaaccagagaactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaactaggctaggcaacgtgtctgtaatgagcgggagagatgggaaaaccagagaactg 500

                                                
Query: 301 gacatggcttagctcttacaggcatctagaaagttta 337
           ||||||||||||||||||||||| |||||||||||||
Sbjct: 501 gacatggcttagctcttacaggcgtctagaaagttta 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)