BAC Information

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BAC

Clone NameMSMg01-430P03
Chromosome8 (Build37)
Map Location 74,187,930 - 74,188,293
singlet/doubletsinglet
Overlap geneUnc13a
Upstream geneLsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1
Downstream geneJak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430P03.T7 (MSMg01no430_p03.b1)MSMg01-430P03.TJ (MSMg01no430_p03.g1)
ACCAG523318AG523319
length767797
length of high quality
(start - end)
364 (52 - 415)364 (81 - 444)
definitionCHROMAT_FILE: MSMg01no430_p03.b1 PHD_FILE: MSMg01no430_p03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:03 2005CHROMAT_FILE: MSMg01no430_p03.g1 PHD_FILE: MSMg01no430_p03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTATTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATCGTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAAT
GTACCACATTTTCTGTATCCATTTCTCTTTTGAAGGCATCTGGGTTCTTT
CCAGCTTCTGGCTATTATAAATAAGACTTCTATGAGCATAATGGAGCATG
TGTCCTTATTACGTGTTGGAGCATCTTCTGGGTATATACACAGGAGTGAT
ATTCCTAGGTCCTCTGATTAGTACTATGTCCAATTTTCTGAGGAATCACC
AAACTGATTTCCAGAGTGGGTGTACCAGCTTGCAATCCCACCAGCGATGG
TGGAATGTTCCTCTTTCTTCATATCCTCACCACCATCTGCTCTCACTTGA
GTTTCTGATCTTAGCCATTCTGAAGAGTTCTCATGAGTCTAACATCTTGA
GTTCTTAGTATATCTTGCATAGTATTCCTCTATCAGTTGTACAATTAGTA
AAGATCTTTTCTCCCCCTGCTGGTTGCCAAGTTGCCTCTAAGATCCTGCC
CTCTGTCTTCTTTAAAGACTGCTCCCTACTCATTCCCTATCTTTTTTTAT
CTTCCTACTTTTTCTCTTCACCCCCTCTCCTCCTTCTTTCCTTTCTCCTC
TTACCCGACTTTCTTTTTTTCCCTTTTTTTTTTACTCCTCTCTTATCACC
ATTCCTTTCCTTCTTTCCTTATTACTCCTCTTCCCCATTTCTTTTCCCTT
CCTTCTTCTTTCTCTCG
NNNCCTTGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGGTGAATGCTTTAAATC
ACTAGGTGGTGACCCAAGCTGAGTACATGGGTAGGGGGAGCAAGTCTTAC
TTTCCTTAGACACAGCCCCTGGGTCTCTGCCAGGCCCTCTTCTCCACCTG
TCACTCACCTCATTGGACTGGCGGATGGTCCGCAGCGGGATCCACACAGT
ACCCACCATCGTGTCCCAGATGAGACCCTTGTTCCACACCTCCACGGTCA
GGCCTAGATCCAGGCGGTTGATCTCACTGTGTGCACAGCACAGGGGGATG
AGAAGGAGAGAAGGCAGGCTCAGAGAGGTCAGTGCGCTGGCCTGAAGACA
CATAGCATACTGCAGTAGGAAGCCAGACCTGGAGGAGCCAGTGCCAAGAA
AGGCAACACACTGATTCATTCTATGGAGGGGAAACTGAGGCCACAGGGAA
GAGCTTGTACCTTATAATATTGTAGGCACCCCGAGTTGAACTCGGAAGAA
TATGGCTTTGTAACCTATACGTTACCACCTCCCCCTTTCTCTTATTGGTT
CCCTTGTTGTGGTTATTGTAACTCCTCATCATGATTTCTCCACCGCCTTA
CATTCATTTCTCTCTCCGGTCCTCTTTTCTTTTCTCCGGTTTCTCTCTTT
TTTTTCCTCCCTTTTTGACTCTAGCTATTCCCTTCTTTTTGACCGTCTGT
CCTCCTCCTCATCTCTAACCCTACTTATTTTATCTCGTATCTCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_p03.g1 MSMg01no430_p03.g1 CHROMAT_FILE:
MSMg01no430_p03.g1 PHD_FILE: MSMg01no430_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:03 2005
         (364 letters)



>mm_chr8_74187730_74188493
          Length = 764

 Score =  704 bits (364), Expect = 0.0
 Identities = 364/364 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctggtgaatgctttaaatcactaggtggtgacccaagctgagtacatgggtagggggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctggtgaatgctttaaatcactaggtggtgacccaagctgagtacatgggtagggggag 260

                                                                       
Query: 61  caagtcttactttccttagacacagcccctgggtctctgccaggccctcttctccacctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagtcttactttccttagacacagcccctgggtctctgccaggccctcttctccacctg 320

                                                                       
Query: 121 tcactcacctcattggactggcggatggtccgcagcgggatccacacagtacccaccatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcactcacctcattggactggcggatggtccgcagcgggatccacacagtacccaccatc 380

                                                                       
Query: 181 gtgtcccagatgagacccttgttccacacctccacggtcaggcctagatccaggcggttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtcccagatgagacccttgttccacacctccacggtcaggcctagatccaggcggttg 440

                                                                       
Query: 241 atctcactgtgtgcacagcacagggggatgagaaggagagaaggcaggctcagagaggtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctcactgtgtgcacagcacagggggatgagaaggagagaaggcaggctcagagaggtc 500

                                                                       
Query: 301 agtgcgctggcctgaagacacatagcatactgcagtaggaagccagacctggaggagcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtgcgctggcctgaagacacatagcatactgcagtaggaagccagacctggaggagcca 560

               
Query: 361 gtgc 364
           ||||
Sbjct: 561 gtgc 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)