BAC Information

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BAC

Clone NameMSMg01-431D11
Chromosome8 (Build37)
Map Location 84,979,262 - 84,979,499
singlet/doubletsinglet
Overlap genenone
Upstream geneInpp4b, LOC671182, Il15
Downstream geneEG666564, LOC675800, EG666289, Zfp330, Rnf150, LOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431D11.T7 (MSMg01no431_d11.b1)MSMg01-431D11.TJ (MSMg01no431_d11.g1)
ACCAG523526AG523527
length727742
length of high quality
(start - end)
240 (68 - 307)245 (68 - 312)
definitionCHROMAT_FILE: MSMg01no431_d11.b1 PHD_FILE: MSMg01no431_d11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:25 2005CHROMAT_FILE: MSMg01no431_d11.g1 PHD_FILE: MSMg01no431_d11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGCGGCGCTAAACGACTCATATATGCAGAACACCGCGGAATCATACTTT
TTACGCTAATGTTTTGNTTTTTGCTGTTTTAGAGTCCAGTATATGTTGAG
AGTCTAAATTCTTATGAGTAAGCAAACTCTGTGTTGAAGTGTACTGTTTT
CATATCTGGGAGACTGCAATTATAACCACTATAAAATTTTATGTATAGGA
TTGTTTTGAATGTGTGGTTTTATTTTCTATTCCCCACTTTATAGTAAAAA
TGATGTATTATGGAATACAAACATACAGACATATCTAACTTAAAAACAAA
GTGGCTCNTTGCNTCCAGGGCTAGTGGGGTTATTTATTCTCTTACCAGTG
AAAATGAGACGTTCAGCCTGTGAAGTCACATTTCCATCAGTACCTGCCAT
GATCAGCACTGGTTGGCTTAGCTATCTTACTGCATTGGCTAATATAAACT
GTGAATTATCTAACAGACTTGAATTTCTTTACTTCTCTTCTAAAATTGAG
GCAAAACTGTTCAATATGTCACCAGCAAACATAACTGGGTTTGTGTTATT
TTGTTTTGTTTTAACACAAGAACCCACTCTGTAACCCATGTTAGTTGAGA
ACAGAAGTAACCTATGTTGGCCTCCAAGCCAGAGAATTTCTTTGCCTCTA
CATCTTGTGCTAAGACTACAATCATCAGCCTCCACTTTTTACTATCTCAC
TCACTAAATACCTCATCTTCTATTATA
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATTTCTATTAAGGACTGGTTCACATAATACTTC
CTGTAATTCTGGTTCTTTTTTTTATTAGATATTTTCTTTATTTACATTTC
AAATGTTATCCCCTTTCCTAGTTTCCCTTCTGAAAAATCCCCTATCCCCT
CCCCCTCTCCCTGCTCAGCAACCCACCCACTCCAGCTTCCTGGCCCTGGC
ATTCTCCTATACTGGTGCATATAATCTCCACAGGACCAAGGGCCTTTCCT
CCCATTGATAAGTGTTCTAGGCCATCCACTGCCACATATGCAGCTAGAGC
CATGAGTCCCATCATGCGTTTTCTTTGCTTGGTTGTTTAGTCCGAGGGAG
GTCTGGAGGTACTAGATAGTTCATATTGTTCCTTCTATGGGGGTGCAAAC
CCATTCAGCTCCTTGAGTACTTTCTCTAGCTTCTTCATTGGGGACCCTGT
ACTCCGTCCAATGGATGGCTGTGAGCATCCACTTCTGTATTTGTCAGAAA
CTGCCAGAGCCTCTCAGGACACAGCTATATCAGGCTCCTGTCAGAAAGCA
CTTGTTGGCATTCACAGCAAGGTTTGGGTTTGGTGAATATATATAGGATA
GATTCCCCAGGCGGAGCAGTCTCTGGAAATCCTTTCTTTACCTCTGCTCC
CCATTTGTCTTTATACCCCCTTCCTGGGTTATTGTTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_d11.b1 MSMg01no431_d11.b1 CHROMAT_FILE:
MSMg01no431_d11.b1 PHD_FILE: MSMg01no431_d11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:25 2005
         (240 letters)



>mm_chr8_84979062_84979701
          Length = 640

 Score =  453 bits (234), Expect = e-132
 Identities = 237/238 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttgctgttttagagtccagtatatgttgagagtctaaattcttatgagtaagcaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttgctgttttagagtccagtatatgttgagagtctaaattcttatgagtaagcaaac 260

                                                                       
Query: 61  tctgtgttgaagtgtactgttttcatatctgggagactgcaattataaccactataaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgtgttgaagtgtactgttttcatatctgggagactgcaattataaccactataaaat 320

                                                                       
Query: 121 tttatgtataggattgttttgaatgtgtggttttattttctattccccactttatagtaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 tttatgtataggattgttttgaatgtgtggttttattttctattccccactttaaagtaa 380

                                                                     
Query: 181 aaatgatgtattatggaatacaaacatacagacatatctaacttaaaaacaaagtggc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatgatgtattatggaatacaaacatacagacatatctaacttaaaaacaaagtggc 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)