BAC Information

Click to search

BAC

Clone NameMSMg01-431P01
Chromosome8 (Build37)
Map Location 17,105,245 - 17,296,452
singlet/doubletdoublet
Overlap geneCsmd1
Upstream genenone
Downstream geneLOC665638, LOC100040466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431P01.T7 (MSMg01no431_p01.b1)MSMg01-431P01.TJ (MSMg01no431_p01.g1)
ACCAG524082AG524083
length793742
length of high quality
(start - end)		213 (69 - 281)484 (70 - 553)
definitionCHROMAT_FILE: MSMg01no431_p01.b1 PHD_FILE: MSMg01no431_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:28 2005CHROMAT_FILE: MSMg01no431_p01.g1 PHD_FILE: MSMg01no431_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,105,245 - 17,105,453)(17,295,969 - 17,296,452)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCACTCATATCAGCAGATAAATGTCAGACTACTCGGTAGTATACTGTCT
TTGACACAAGAGTTTGTGTGTTCTCTTCCTAGCCACAATGAAGGGATTGA
TAGTTTTCTCCTGAGAGTTGTGGGTTTCAGTTGTGACCAGTTTCTGACTG
TGAGCTAGGGATCACAATTCTAAAGATATTTTTGGAAAGGACTGGAAATG
TGAGAGGTTTTGGGGGGAACTGTTGCCTGGAGACTTCCATCAATCTGTGT
GTGGAGGAACCTTGTTTTTTCTCCTCCTGCTAGATTAATGCTTTTACAGT
CATTGGTCTTTTATGATGCGAGTGTCTTTATCCTTTGAGCTATGTCCTCT
GACAGGTTGACGATGTCCAATTGGATGTTATTTCTACCCTTCTTTATCAA
CTGTTCTGTCTGCACCCTTTCTCGCTTTTTTTTTTCCCAGTTTTTTCTTT
ACTTTATTCCACCCCCGAGATTTTTATTTTTACTCGCCCGACTTCCTCTT
TTTCCTTTTTCTCCCTGCCTCTCTTTTCTCTTTTTATGTCATATCCCCTT
ACCTCCCCTTTTTTTTTTTTTTCTCCTTCTTCCCTCTTTGATTCTTTCTT
CCCTCCCTTTATAACTAAATCCCTCCCGCCCTCTTCTCTTTTTCTTTCTC
TCCTTTTTTTTTCCCCGCTTTTGGTCGTCTTAACTTTATCACTTTTCTTC
CATTCCTTATTCCCTACTTTTCTTCTATCTTCCTCCTCTTACG

AATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTTCTATCCAAATGTGAAATGGGTGAGAGC
TGCTGTTGCTTTATTAAGGGAATTACCTCAGCATTCAAAGTAGAACGAGA
CAGAGAACAGATTCTAGTTGATAATACTCTTCTCTCACTTTTCCATTCCT
TCCCTCCCCTCAGGCTGCTCTTGCATCATTCTTTCCTTCTTTTTAGAAAA
AGAATAAACCTTGCACACACTCCTCTCTGTTGCTGGGTCTGAAGATTTTG
TTAAGCTGAGAGATACCTATGTGACAACACCCATGTATTTAAGCAGTGAC
TATTAGTGATATATTTATAACATATTTAGTTACTTCATTTGTTTCACATT
GAAACATTAAAATATTATATATATTGTGTGCATTATGATATGATATGTAC
ATATATATACATGTGTGTATTTATTTATTTATCAATACATCTATACCTTG
TATGATACTATAATCAAATTGCCTGCTCTGTTCTCAGGGATTAGGTTGTT
GGTAAAAGCATTACATTTTTTTTCTTGAAGGCTTTTGGCAAGCCTAATGC
ACATTATCACATCAATGTTCTACTTTGTGCAGAATATCAAAGTTTTTCCC
CCTCTCTCAAAGTTAATTTATTTTTAATAGCTTGTGGTTGGCCCTTTCCC
ACAGGTTCCTTTACCCGGGAGTATTCTCTATCTGTTTTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_p01.b1 MSMg01no431_p01.b1 CHROMAT_FILE:
MSMg01no431_p01.b1 PHD_FILE: MSMg01no431_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:28 2005
         (213 letters)



>mm_chr8_17105041_17105653
          Length = 613

 Score =  381 bits (197), Expect = e-110
 Identities = 206/209 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   tgtcagactactcggtagtatactgtctttgacacaagagtttgtgtgttctcttcctag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tgtcagactactcggtagtatactgtctttgacacaagagtttgtgtgttctcttcctag 264

                                                                       
Query: 65  ccacaatgaagggattgatagttttctcctgagagttgtgggtttcagttgtgaccagtt 124
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caacaatgaagggattgatagttttctcctgagagttgtgggtttcagttgtgaccagtt 324

                                                                       
Query: 125 tctgactgtgagctagggatcacaattctaaagatatttttggaaaggactggaaatgtg 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 tctgactgtgagctagggatcacaattctaaagatatttttagaaaggactggaaatgtg 384

                                        
Query: 185 agaggttttggggggaactgttgcctgga 213
           |||||||||| ||||||||||||||||||
Sbjct: 385 agaggttttgaggggaactgttgcctgga 413


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no431_p01.g1 MSMg01no431_p01.g1 CHROMAT_FILE:
MSMg01no431_p01.g1 PHD_FILE: MSMg01no431_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:28 2005
         (484 letters)



>mm_chr8_17295911_17296794
          Length = 884

 Score =  936 bits (484), Expect = 0.0
 Identities = 484/484 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttctatccaaatgtgaaatgggtgagagctgctgttgctttattaagggaattacctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tcttctatccaaatgtgaaatgggtgagagctgctgttgctttattaagggaattacctc 483

                                                                       
Query: 61  agcattcaaagtagaacgagacagagaacagattctagttgataatactcttctctcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 agcattcaaagtagaacgagacagagaacagattctagttgataatactcttctctcact 423

                                                                       
Query: 121 tttccattccttccctcccctcaggctgctcttgcatcattctttccttctttttagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tttccattccttccctcccctcaggctgctcttgcatcattctttccttctttttagaaa 363

                                                                       
Query: 181 aagaataaaccttgcacacactcctctctgttgctgggtctgaagattttgttaagctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aagaataaaccttgcacacactcctctctgttgctgggtctgaagattttgttaagctga 303

                                                                       
Query: 241 gagatacctatgtgacaacacccatgtatttaagcagtgactattagtgatatatttata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gagatacctatgtgacaacacccatgtatttaagcagtgactattagtgatatatttata 243

                                                                       
Query: 301 acatatttagttacttcatttgtttcacattgaaacattaaaatattatatatattgtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 acatatttagttacttcatttgtttcacattgaaacattaaaatattatatatattgtgt 183

                                                                       
Query: 361 gcattatgatatgatatgtacatatatatacatgtgtgtatttatttatttatcaataca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gcattatgatatgatatgtacatatatatacatgtgtgtatttatttatttatcaataca 123

                                                                       
Query: 421 tctataccttgtatgatactataatcaaattgcctgctctgttctcagggattaggttgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tctataccttgtatgatactataatcaaattgcctgctctgttctcagggattaggttgt 63

               
Query: 481 tggt 484
           ||||
Sbjct: 62  tggt 59


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |