BAC Information

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BAC

Clone NameMSMg01-433H18
Chromosome8 (Build37)
Map Location 35,011,280 - 35,011,634
singlet/doubletsinglet
Overlap geneRbpms
Upstream geneLOC100042715, LOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2
Downstream geneLOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159, LOC666746, Dusp4, LOC675578, Tnks
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433H18.T7 (MSMg01no433_h18.b1)MSMg01-433H18.TJ (MSMg01no433_h18.g1)
ACCAG525256AG525257
length786755
length of high quality
(start - end)
390 (61 - 450)355 (69 - 423)
definitionCHROMAT_FILE: MSMg01no433_h18.b1 PHD_FILE: MSMg01no433_h18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:35 2005CHROMAT_FILE: MSMg01no433_h18.g1 PHD_FILE: MSMg01no433_h18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGGCGCTATACGACTCACTATTTTCAGAGGATCCGCGGAATTCTCTG
TGTTGCTCTGGCTGCCCTGGAACTAACTCTGTAGACCAGGCTAGCCTTGA
ACTCACAGAGATCCACTTGCTTCTGCCTCCTCAAATGCTAGGATTAAAGA
TGTTCGCTACCACCACCTAGTTTAGATTAGGATTTTATATTCTTATCCCT
ATTCAGATTTTCAATTACATTCAGTTAAATATTCAATTAAAAATTACGAT
TTTGAATTGAGCTTTATTTTAGTATCAAATTAAACTTTATAGATACAGTC
CATGGAGAAGGTTGCGAACCTTGTTCCCCTAATCCTTTGATGGTGTACTT
TACACAATGTCACAGTTTTTTTGTATGGCTCAGTTTTTCCAGTTAGCTAA
AGCTCAACAAAGCTAGCAAAGACATAACTGACTAGACATACATCTTTCCA
TCAGCTACTGTTAGCATGAATAGACCATTATAAACTTGGGACTCTATAAA
TCTTAATCCTAAAACCCGTTTATTTTCACGCCCTATTCTCCCTAAACCTT
GGTAAAATCTACTTCAAACCCTTCGGGGATTTTGGCCCTTTTGTCTGTCG
CGCTTGCTCCATCTTACCCCAACCCCACCAATATTCTCCCCTCCCTTCTT
TTTCTTTCTTTTTCATCCTACCCCTTTCTTCTTTTTCTCTTTTCCCGGCC
CCTTCCCTCCTCCTTTCTCTTCTCTCCTTCTCCTTCTTGCTTGTGATCTT
CGTTTTTTTTCTCCCTTCTCCTCGCTCCTCCTTTTN
ATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACAGAGATCCCTCTGCCTCTGCCTCCCAAGTG
CTGGGATTAAAGGTTGGAGTTATTCTTAAGAGTTGCCCAGTGGGTGCTGA
GAGTCAAACCCTGGTCCTTTGGAAGAGCAGCCAGTGTTCTTAACTGCTGA
GCCATCTCCAGCCTCGAAGCTTATTTGTTTTAATTGACATAATTGTATGG
TTAGATAACAGGCAGCGTCTCCTATTGACTGACATTTGAGTTGTTTTTAA
AATTTGTTGCTGTTTACTCAGAAAAACCCTGTCTTGAAAAACCAAAACCA
AAAACAAAACCCCAAAGCCAAATAAAATTTGTTGCTTTTGCTAATAAAAC
TATAAGAATCGACTTTGTAGCCAGGTGTGGTGGGGTATGCCTTTAATCCC
AGCAGACGGAGGCGGATTTTTGAGTTCTAAGGCAGCCTGGCACTTATCAG
CGTTTCTCTGGACAGCCTTGCCTTCTCTACATAAAATCCGTTTCCTTTTT
GCCCTAATATCCCTTCCCTCTCGTCCTTCCTATTTCCTTCCTTTTCCCCT
TTTCCTATCCCCCCTCTTTAATCTCCCCCCCCCATCTCTCCCTCTTCCTT
CATCTCTCTCTTTCCTTCCTCTCCCTTGCCCCTTTCTTTCCTTCTTTCCC
TCCATCCCTTCTCCTTTCCTCCTTTTTTTTCCTTCTTTCCCTTTTCTTTC
CCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_h18.g1 MSMg01no433_h18.g1 CHROMAT_FILE:
MSMg01no433_h18.g1 PHD_FILE: MSMg01no433_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:35 2005
         (355 letters)



>mm_chr8_35010933_35011687
          Length = 755

 Score =  663 bits (343), Expect = 0.0
 Identities = 352/355 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagagatccctctgcctctgcctcccaagtgctgggattaaaggttggagttattctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 acagagatccctctgcctctgcctcccaagtgctgggattaaaggttggagttattctta 643

                                                                       
Query: 61  agagttgcccagtgggtgctgagagtcaaaccctggtcctttggaagagcagccagtgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 agagttgcccagtgggtgctgagagtcaaaccctggtcctttggaagagcagccagtgtt 583

                                                                       
Query: 121 cttaactgctgagccatctccagcctcgaagcttatttgttttaattgacataattgtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 cttaactgctgagccatctccagcctcgaagcttatttgttttaattgacataattgtat 523

                                                                       
Query: 181 ggttagataacaggcagcgtctcctattgactgacatttgagttgtttttaaaatttgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ggttagataacaggcagcgtctcctattgactgacatttgagttgtttttaaaatttgtt 463

                                                                       
Query: 241 gctgtttactcagaaaaaccctgtcttgaaaaaccaaaaccaaaaacaaaaccccaaagc 300
           ||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gctggctacacagaaaaaccctgtcttgaaaaaccaaaaccaaaaacaaaaccccaaagc 403

                                                                  
Query: 301 caaataaaatttgttgcttttgctaataaaactataagaatcgactttgtagcca 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 caaataaaatttgttgcttttgctaataaaactataagaatcgactttgtagcca 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)