BAC Information

Click to search

BAC

Clone NameMSMg01-433M09
Chromosome8 (Build37)
Map Location 32,406,570 - 32,566,868
singlet/doubletdoublet
Overlap gene7420700N18Rik
Upstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568
Downstream geneLOC100041329, EG330731, LOC100041340, Nrg1, 2010007E15Rik, EG666589
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433M09.T7 (MSMg01no433_m09.b1)MSMg01-433M09.TJ (MSMg01no433_m09.g1)
ACCAG525478AG525479
length705690
length of high quality
(start - end)
188 (317 - 504)425 (67 - 491)
definitionCHROMAT_FILE: MSMg01no433_m09.b1 PHD_FILE: MSMg01no433_m09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:58 2005CHROMAT_FILE: MSMg01no433_m09.g1 PHD_FILE: MSMg01no433_m09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,566,688 - 32,566,868)(32,406,570 - 32,406,994)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCNGNGGNA
ATCATGATAACGTAATAAGCACCAGNATCCCCATTAATTATTGAAGCATT
TGAAAGACTCTGAACATCTTGGGAAAATTAAACTATGTAAAGATGAGGCA
AGCATCATTAAACTTTGATATACACGCTTTCAGCATTTTTCATAGTTCCT
ACACAGACATATATACCGCTGTTATAAAAGTAGTAAAATATTCTGTGCAC
CCTTCAACAGATGATTACATTACCATAATTGCTTATTCATTCCTCTCCCC
TGCTGTTCCTATTTTAGGACACTATTATATTTACTGTCACAGACTAACTA
TCTAGCATAATATACCTAGAATAAAAAAGCAGTATAGAAGTATATCCATA
GCTTATACACACTCATACACATACTTATTTACACCCATACACACTCATGC
AGATACTTGTAGACACACTCATACTCACTCGCAGACATTAATATTCACAT
ACACACACTCAGACATATAAATTCACACATACTCAATCACTCACACTCAC
CACACACACATTTTTTTCCACACTCTTCCGTATGCCAATCTCCCTTTTTC
ACAATTTACCTATACTCTAGACACACAAATTTTTTTTTTTTTTTATGTCG
CCCTCCCGGTTCTTACATCCGACACCACCACCACTTACGAAATTTCATTT
TTTTC
CGATGCTGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTCCCCGCGGAATTCACTCACCCTTCTCTGTAGCCATCATAGTA
GGGCGAAGAGGGACATCTTGTTCTCGCCTAGCAATGGGGAAGGCTATGCT
CTCTGCCTGGTGCCCTCTGATTCTCTGAAGAATGAGGATAACAGTCTCAG
CTCCCTACTTTGCCTTCTATGACAATATTGAGGCATGAATGTTTGGACAA
TGCCTTTTAGAGTCTTGTAAGAGTAGACGTCTATGCTCTTCACTCATCCT
CTGCACGTGTATTTGGATTCGTGGCCATTTCTTTGTGTTTTACCTTTTAC
ATATTTGTTGTGGTAAAAATAGGATAATATATACATTTACTATTTTAAGT
GTACAGTTCACTGGCTTTAAAACCATCCACATTTGCAATTCGTCACCATA
AAAACTGAATGGGGACAGTGTTGTCCTCTCCTCCCAACACTGGGCTACAG
TGATTCTGTTTTCTGCCTTTGAGTGCCACTGCTTTGGTCATGCCATAACA
ATGGCAGCATGCCGTGTGTGTTTAGCTTATTTCTTAAGTATGGTGCTTAC
AACTCCATTCCTATTATGGCATGTGTCACCATTTCTCTTTTGTTTGACAC
CATAATACACGTCTGCCATTGTGCCCTTTTACGCTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_m09.b1 MSMg01no433_m09.b1 CHROMAT_FILE:
MSMg01no433_m09.b1 PHD_FILE: MSMg01no433_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:58 2005
         (188 letters)



>mm_chr8_32566481_32567068
          Length = 588

 Score =  335 bits (173), Expect = 1e-96
 Identities = 179/181 (98%)
 Strand = Plus / Minus

                                                                       
Query: 8   attatatttactgtcacagactaactatctagcataatatacctagaataaaaaagcagt 67
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 attatatttactgtcagagactaactatctagcataatatacctagaataaaaaagcagt 329

                                                                       
Query: 68  atagaagtatatccatagcttatacacactcatacacatacttatttacacccatacaca 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 atagaagtatatccatagcttatacacactcatacacatacttatttacacccatacaca 269

                                                                       
Query: 128 ctcatgcagatacttgtagacacactcatactcactcgcagacattaatattcacataca 187
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ctcatgcagatacttgcagacacactcatactcactcgcagacattaatattcacataca 209

            
Query: 188 c 188
           |
Sbjct: 208 c 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no433_m09.g1 MSMg01no433_m09.g1 CHROMAT_FILE:
MSMg01no433_m09.g1 PHD_FILE: MSMg01no433_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:58 2005
         (425 letters)



>mm_chr8_32406370_32407194
          Length = 825

 Score =  806 bits (417), Expect = 0.0
 Identities = 423/425 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcactcacccttctctgtagccatcatagtagggcgaagagggacatcttgttctcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcactcacccttctctgtagccatcatagtagggcgaagagggacatcttgttctcg 260

                                                                       
Query: 61  cctagcaatggggaaggctatgctctctgcctggtgccctctgattctctgaagaatgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctagcaatggggaaggctatgctctctgcctggtgccctctgattctctgaagaatgag 320

                                                                       
Query: 121 gataacagtctcagctccctactttgccttctatgacaatattgaggcatgaatgtttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gataacagtctcagctccctactttgccttctatgacaatattgaggcatgaatgtttgg 380

                                                                       
Query: 181 acaatgccttttagagtcttgtaagagtagacgtctatgctcttcactcatcctctgcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaatgccttttagagtcttgtaagagtagacgtctatgctcttcactcatcctctgcac 440

                                                                       
Query: 241 gtgtatttggattcgtggccatttctttgtgttttaccttttacatatttgttgtggtaa 300
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtaggtggattcgtggccatttctttgtgttttaccttttacatatttgttgtggtaa 500

                                                                       
Query: 301 aaataggataatatatacatttactattttaagtgtacagttcactggctttaaaaccat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaataggataatatatacatttactattttaagtgtacagttcactggctttaaaaccat 560

                                                                       
Query: 361 ccacatttgcaattcgtcaccataaaaactgaatggggacagtgttgtcctctcctccca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccacatttgcaattcgtcaccataaaaactgaatggggacagtgttgtcctctcctccca 620

                
Query: 421 acact 425
           |||||
Sbjct: 621 acact 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)