BAC Information

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BAC

Clone NameMSMg01-433N17
Chromosome8 (Build37)
Map Location 10,179,094 - 10,179,507
singlet/doubletsinglet
Overlap geneMyo16
Upstream geneTmem28, Lig4, Abhd13, Tnfsf13b
Downstream geneLOC100040008, LOC384782, LOC100040507, LOC665306, Irs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433N17.T7 (MSMg01no433_n17.b1)MSMg01-433N17.TJ (MSMg01no433_n17.g1)
ACCAG525541AG525542
length786801
length of high quality
(start - end)
420 (35 - 454)226 (68 - 293)
definitionCHROMAT_FILE: MSMg01no433_n17.b1 PHD_FILE: MSMg01no433_n17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:04 2005CHROMAT_FILE: MSMg01no433_n17.g1 PHD_FILE: MSMg01no433_n17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCTCC
CTCTATCAATATGTGCTGGTCTAGTCTACTGCAGCCCCTGCCCTTCTCTT
CCCTCATACATGACCTTGATGGATACTATGGAGATTTCACATGTTACTGC
TATAGCTGGGAGCTGGATCTTTGCCTCACTTAAGACACAAAATACATTTC
CTAACCTGATGCCTCTAAATGCTCTCTAGCAGAAAGTGCCATTCTGCAAT
TCTGTTGTTTCTAATTCTGAAAATATTCTCTACATGCATCCTTCATCATT
TTTGCCATTTATGCCACCTGGTTGGCACAGGGGACAGGGGTGGTACTCTA
ATAGATAATTATCTAGAGGTTGACTCCAATACTCCACAGCTCCCACCAAT
GCCCCAATATAGGAAGGATTCACATAAGTTCAAGGTATAATTCTGAGCAT
GGCAAGATTAAATTCCTCTTTGTGGCGAGGACTGGTAAGTTCTCCTCCCA
ATCACCGGCATGTATCTGACACACGGGTCGCGCCTACCCTCGACGTTTTC
TTTCTCATTCAAAAAAACATTTGCGGTTAAATCTCTTCCCCCCCCCGGAC
TTGCAACTCCCCCCTCCTTCCGTCTTTGTTATTCTCCCCCCCCCTCCTTT
TTCCCCTCTCCCCCCCCTTTTTCCCCTTCTACTCTACTTTCCCATTTTTG
CTCTTTCCCTTCTCTCCCCCCTTTTTTTCCCCCCTTTCCTTATCCCCCCC
CTCCTCTTTTTCCTTCCCTCACCCCCTCCTCATCCN
NTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACCGTGGTCTTTGCTTTGTTTTACTGTGGACAT
TTTTTTCTCTTTTTTTTCTTTTTGTTTGTTTTTCGAGACAGGGTTTCTCT
GTGTAGCCCTGGCTGCCCTGGAATTCACTCTGTAGACCAGGCTGGCCTAT
GAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATCAAAGGC
ATGTGCCACCACGCTCGGCTTGCTGAGGACATTTTTAACTCCTTCAAATT
TTCAGAAAACATGAGCTTCTTATTTAGGGNTCTTCTGGAAAGGACCTTAT
TTTGATCCGGAATATAAATTAGTACTTTTCTAATAAATTCCACTTGGAGA
AAAAATTAAACCCCCCCCCCCCCCCCCAGAATTTTAAAAGTAAAACTGGG
GCTAGATTTTACCCTTCCCCTTTCGGGATTTTTAGAAAAATTCATCCTCT
TCACTATTGTAGGCCCCCTAATCCCCCATTTCCCTTGGGTCCCAAATTAC
TCTCCCCCTACAAATCCCCTTTTTGTCCCCCCCCTCATAAAAAAGTGCAC
TTTTTCTTCCTGTTCTTGCTCCTCTCTATCTCCCCCCTTTCTTCCAAAAA
CTTTCTTTTCCCTTTTTTCCCATCTCCCTTTCTTTTTTTTTCTCGTCCCC
TCTTTAACCTTTCCCTTCTCTTTTCTCTCTTCTCGCTTTCTCTTTTTTCC
CTCCTTCTCTCTCTTTCCCACCTTCCTTCTTCTTTCTTCTTCCCCCCTCT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_n17.b1 MSMg01no433_n17.b1 CHROMAT_FILE:
MSMg01no433_n17.b1 PHD_FILE: MSMg01no433_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:04 2005
         (420 letters)



>mm_chr8_10178887_10179707
          Length = 821

 Score =  764 bits (395), Expect = 0.0
 Identities = 409/417 (98%), Gaps = 7/417 (1%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattctccctctatca----atatgtgctggtctagtctactgcagcccctgcccttct 63
           ||||||||||||   ||    |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaattctccctc---caggatatatgtgctggtctagtctactgcagcccctgcccttct 565

                                                                       
Query: 64  cttccctcatacatgaccttgatggatactatggagatttcacatgttactgctatagct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cttccctcatacatgaccttgatggatactatggagatttcacatgttactgctatagct 505

                                                                       
Query: 124 gggagctggatctttgcctcacttaagacacaaaatacatttcctaacctgatgcctcta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gggagctggatctttgcctcacttaagacacaaaatacatttcctaacctgatgcctcta 445

                                                                       
Query: 184 aatgctctctagcagaaagtgccattctgcaattctgttgtttctaattctgaaaatatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aatgctctctagcagaaagtgccattctgcaattctgttgtttctaattctgaaaatatt 385

                                                                       
Query: 244 ctctacatgcatccttcatcatttttgccatttatgccacctggttggcacaggggacag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctctacatgcatccttcatcatttttgccatttatgccacctggttggcacaggggacag 325

                                                                       
Query: 304 gggtggtactctaatagataattatctagaggttgactccaatactccacagctcccacc 363
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 324 gggtggtactctaatagataattatctagaggttgactccaataccccacagctcccacc 265

                                                                    
Query: 364 aatgccccaatataggaaggattcacataagttcaaggtataattctgagcatggca 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatgccccaatataggaaggattcacataagttcaaggtataattctgagcatggca 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 821
Length adjustment: 9
Effective length of query: 411
Effective length of database: 812
Effective search space:   333732
Effective search space used:   333732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)