BAC Information

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BAC

Clone NameMSMg01-433O05
Chromosome8 (Build37)
Map Location 4,968,013 - 4,968,406
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687
Downstream geneLOC436026, Slc10a2, LOC434275, LOC623409, LOC669429
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433O05.T7 (MSMg01no433_o05.b1)MSMg01-433O05.TJ (MSMg01no433_o05.g1)
ACCAG525565AG525566
length750734
length of high quality
(start - end)
244 (62 - 305)411 (70 - 480)
definitionCHROMAT_FILE: MSMg01no433_o05.b1 PHD_FILE: MSMg01no433_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:07 2005CHROMAT_FILE: MSMg01no433_o05.g1 PHD_FILE: MSMg01no433_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTGTTGCCATCTGAGCCCCATTTTTTAATGGGGTTATTTGGTTTTCTGGA
GTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCAG
ATTTAGGATAGGTAAAAATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTC
TTATTGACAGTGTCTTTTGCTTTACAGAAGCTTTGCAGTTTTATGAGGTC
CCATTTGTCAATTCTTGATCTTACAGCGCAAGCCATTGCTGTTCTGTTTA
GGAATTTTTCCTCTGTCCCCATATCTCCGAGGCTTTTCTTTACTTTCTCC
TCTATTAATTTCAGTGTCTCTGGTCTTATGTAGAGCTCTTTGATCCACTT
AGACTTGAGCTTTGTACAAGGAGATAAGACTGGATCTATTCGCATTAATC
TACATGATAATGCTATCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTC
AAAGATCAAGTGATCATAGGCGTGTGGATTCCTTTCTGGGTCTCTCAATT
CTATTCCTCTGTTCTTACCTGTCCGTCTCTGCCCTATTATCGCCGTCGCT
CTTACTCCTTACTGCCTCTTCACCCGTATCCCTTATGTTTTGTTTTGGGT
GAATCCTACCCCTACTGTTTCTCTCTCCTTGGTTGTCCCCCCTCTCTTTC
TCCTTACTCGCCTTTCTCTCCGGTTCCCGCCCCGTGATTGTTGTTTTTTN

ATGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCGAAGAGGCATGCTAAGCAGTAGCAGCATG
TGAATGGAAACAAATGCAAATAATTACCAGGCTTTAGAGAAAACTTACTT
CCCAAATCATCAAAATTGGACTATAGGGCTTGATTATAGAGAAAAAGTGA
CTTGCAGCTTATTAGCTCCATGCCATTCCCTGGCTACTTGGCACAGGGTC
AACTGTTCACTGTGAGGGTACTTAGTATTACCCTAATGACCTCACAGGAG
TTTCACCTTTGTTCTGGTTTCTTTACAATATATCCATCTCCAACAAACAC
TAAGAAAAAATACTGTCATATCATTGATGGGTTGAAAGTAAGGCTGTTTT
TCCAGGTGGTTTTAGGAGATAAACACTTCAAATTTGAGGAAAAAGTGATT
TTTTTCTTTGCAAATGCTTCTTTTCAGTAAATGGAGGCGGGCAATTCTAA
TCATTATTACATAATCTTTTAATTTTGAGCATTCCATATCCCTATTCTGA
TATATGATCCTATCCCAATGCTCCTCCCTTAATCACCCTGGATCTACCCC
AACATGTCCTATTCTAAGTTTTTTACACGTGCGTCTGGCTTGTTCGCATT
TCTCCCGGGTTATCGCAAACCCCTTCTCTCACTCCCACGATTTTGCCTCC
TCTCCCCCTTACCCCTCTTTTTCCCTCTCGTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_o05.g1 MSMg01no433_o05.g1 CHROMAT_FILE:
MSMg01no433_o05.g1 PHD_FILE: MSMg01no433_o05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:07 2005
         (411 letters)



>mm_chr8_4967795_4968606
          Length = 812

 Score =  723 bits (374), Expect = 0.0
 Identities = 389/394 (98%), Gaps = 1/394 (0%)
 Strand = Plus / Plus

                                                                       
Query: 19  cagtagcagcatgtgaatggaaacaaatgcaaataattaccaggctttagagaaaactta 78
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 cagtagcagcatgtgaatggaaacaaatgcaaataattaccaggctttagagaaaactta 278

                                                                       
Query: 79  cttcccaaatcatcaaaattggactatagggcttgattatagagaaaaagtgacttgcag 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 cttcccaaatcatcaaaattggactatagggcttgattatagagaaaaagtgacttgcag 338

                                                                       
Query: 139 cttattagctccatgccattccctggctacttggcacagggtcaactgttcactgtgagg 198
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 339 cttattagctccatgccattcccttgctacttggcacagggtcaactgttcactgtgagg 398

                                                                       
Query: 199 gtacttagtattaccctaatgacctcacaggagtttcacctttgttctggtttctttaca 258
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 399 gtacttagtattaccctaatgacctcacaggagtttcacctttggtctggtttctttaca 458

                                                                       
Query: 259 atatatccatctccaacaaacactaagaaaaaatactgtcatatcattgatgggttgaaa 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 atatatccatctccaacaaacactaagaaaaaatactgtcatatcattgatgggttgaaa 518

                                                                       
Query: 319 gtaaggctgtttttccaggtggttttaggagataaacacttcaaatttgaggaaaaagtg 378
           ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 519 gtaaggctgttttgccaggtggttttaggagataaacacttaaaatttgaggaaaaagtg 578

                                             
Query: 379 attttttt-ctttgcaaatgcttcttttcagtaa 411
           |||||||| |||||||||||||||||||||||||
Sbjct: 579 attttttttctttgcaaatgcttcttttcagtaa 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 812
Length adjustment: 9
Effective length of query: 402
Effective length of database: 803
Effective search space:   322806
Effective search space used:   322806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)