BAC Information

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BAC

Clone NameMSMg01-434C07
Chromosome8 (Build37)
Map Location 52,989,719 - 52,990,070
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667517, LOC623872
Downstream geneLOC100040220, LOC623935, 1190028D05Rik, LOC676688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434C07.T7 (MSMg01no434_c07.b1)MSMg01-434C07.TJ (MSMg01no434_c07.g1)
ACCAG525761AG525762
length778769
length of high quality
(start - end)
439 (36 - 474)352 (66 - 417)
definitionCHROMAT_FILE: MSMg01no434_c07.b1 PHD_FILE: MSMg01no434_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:27 2005CHROMAT_FILE: MSMg01no434_c07.g1 PHD_FILE: MSMg01no434_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGTG
TAATTCTCGATAGGTCTGTCTTTATATGTTACTTGGCCCTTTTCCCATAG
AGCTTGTAATATTCTTTCTTTCTTCAGTTCTTTTGGTGTCTGGATTGATA
TGTGACAAGAGGATTTTCTTTTCTGATCCAATCCATTTGTTGTTCTGTAG
CCTTCTTGTAGAATTATGGCCATCTCTTTCTTTATGTTAGGGAAGTTTTC
TTGTATGATTTTGTTGAAGATGTTTTCTGGCCTTTCACCCTCTTTTATTC
CTATTACTCTTATTTTTGTTCTTTACATAGTATCTTGAAATTCCTGAATA
TTTTGGGTTAGTAGATCTTTATACTTTGTATTTTCTTTGACCAATGTATC
AATATTTTCTATAGTATCTTTTATGCCTGAGATTCTCTCTTCTATCTCTT
GTATTCTGTTGATGATTTTCACATTTGCAGCTTCTGATCTCTTCCCTATA
TTATTCATCTCCAAGGTTGCTTCCCTTTGTGTTTTCTTTATTTTTTCTCT
ATTTCCTTTTTTAGTTCCTTGAATCATTTTTTTTATTCATGCCTTTCTCT
CGGTTGTATCTTTATTTTCCTCTGTAATTTCATATGTATATATTTTTTAT
TTTTCTTTCTTTTTCTTATCATTATTACTCTATTTGTCTCTCGTGCGCCT
TTCTATGGAACTATATTCCTTAAAACGTTAGTTCTCTTTTTATCAATCCA
ATATATCCCATCACTTCTACTCCTTATN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAACTTCAAAGATGAGTCACATAGAAATTTCTAGTG
AATGACAATGAAGAAGTGCAATAATACAAAAGAAAACCACAGAAAAACTA
TGAAAAGTGAGGAGATATATAACAGACATTTCATTGTATGTTAGAGTAAA
ACTGGATAATATTTGGGCAGTGACTATTCATTTTTAGATAAGATACTATA
AATATCATGTACAATATAATAAGTAATTTACTTCAATATTTTAAGTAATC
TCCATCTTTATAAAATGATTCCAACTGTTTACTCTTTAATATATATTTCA
TTAAATACTTGAATTATGATTTATTGGTTTCTCAGAAAATTGCATCTTCT
AGCATAAATGAACTCGAGTAGACTTCAAGTCAAATTTAAGCAGGTAACCT
TTAGTAGTTCAAGAAGGCTAATTTTTAACGCCATTTATTTTTGAAAAGTG
CTCCAAATACTTATATCTATAAATATTTAATAACCTCTTTATATCCTATT
TTTACTCAATTTTAGCCTCTTTCCCTCATAGGCTTTAATGGATTCTTCCT
TCTTGTGTTCCGGCATTCATTAAACTATTCCCCCTTGAATATTTTTGCGA
TTCTCCTTCCTAATTCTTTTAAATTAGTCGCTTATTAATTTTATCTTACT
CTTTTTAATATATCTACTTTCTATTTCTACTCTTCACATCGTTCATACAT
GCTTCAATTTATTTCACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_c07.g1 MSMg01no434_c07.g1 CHROMAT_FILE:
MSMg01no434_c07.g1 PHD_FILE: MSMg01no434_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:27 2005
         (352 letters)



>mm_chr8_52989519_52990270
          Length = 752

 Score =  650 bits (336), Expect = 0.0
 Identities = 348/352 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacttcaaagatgagtcacatagaaatttctagtgaatgacaatgaagaagtgcaataat 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 552 aacttcaaagatgagtcacatagaaatttctagtgaatgacaatgaaaaagtgcaataat 493

                                                                       
Query: 61  acaaaagaaaaccacagaaaaactatgaaaagtgaggagatatataacagacatttcatt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 492 acaaaagaaaaccacagaaaaactatgaaaagtgaggagatatataacagacctttcatt 433

                                                                       
Query: 121 gtatgttagagtaaaactggataatatttgggcagtgactattcatttttagataagata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gtatgttagagtaaaactggataatatttgggcagtgactattcatttttagataagata 373

                                                                       
Query: 181 ctataaatatcatgtacaatataataagtaatttacttcaatattttaagtaatctccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ctataaatatcatgtacaatataataagtaatttacttcaatattttaagtaatctccat 313

                                                                       
Query: 241 ctttataaaatgattccaactgtttactctttaatatatatttcattaaatacttgaatt 300
           | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 312 ccttataaaatgattccaactgttcactctttaatatatatttcattaaatacttgaatt 253

                                                               
Query: 301 atgatttattggtttctcagaaaattgcatcttctagcataaatgaactcga 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 atgatttattggtttctcagaaaattgcatcttctagcataaatgaactcga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)