BAC Information

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BAC

Clone NameMSMg01-434D21
Chromosome8 (Build37)
Map Location 106,074,300 - 106,074,848
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh11, EG667618, LOC100041368, 1600027J07Rik
Downstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434D21.T7 (MSMg01no434_d21.b1)MSMg01-434D21.TJ (MSMg01no434_d21.g1)
ACCAG525835AG525836
length7311,376
length of high quality
(start - end)		554 (39 - 592)---
definitionCHROMAT_FILE: MSMg01no434_d21.b1 PHD_FILE: MSMg01no434_d21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:36 2005CHROMAT_FILE: MSMg01no434_d21.g1 PHD_FILE: MSMg01no434_d21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
CCAGGAGTATCGGGCTCAGGGTGATGCGCTTCCCACCGATGGATCCCTAT
ACGGCTTCCCTGCTGACATTACACGTTTCCTTTTTTGCAGCTCTGATTTC
TCATTCTTCCAGACATTGCTGTGACTCTGTGGGGGGAGGCAGGAGGGACT
TCTCCCTTTCCTAAGAAGCCGGCAGCAACAGGGATTTGTTTTCCCCACTC
ATCATGACTGTGCATGTGAGCAAGACTGGTAACTTGTTGCCCACCGTGCA
CGGCTGCACAGCCAGATGTTGCTGATTCTCAGGTCTCCCAGCTGGCTCAG
AGCAGGCTGCAATCACAGAGGCAGGAGTGGAACCTCCTGGGCTTGTGCTT
CTGGAAAGTCACCTCATTCACCAGCCCACTGAAGATGTCCGTTGGGGCAT
CCAGCTAACTTGCCATTGGTCCCTGAGTTGGAGGAAAGTTCTACAGATTG
GAAGGCTGCCTCCAAAGGACATTCTCTATGGACTTTTTCTGCCTCTGGTT
GCTAATGCATGGTGCTCTGAATGAATGATTTCCCTGCTTCATCAACGTTT
AATATTTAGGAAAAGGAATATCTTATTTGTCTTGCTAAATGCAAATTGGG
AACCCATCCTTGGTCTGATCACATGGAAATTTCCTGGCTGAGGGTGGNAA
GAGAGAGAGAGAGAGAGAGAGAGAGTCAGCC

GGTGGGGTGTGTGTGATGTGTGCGGGCGCGGGGTGGCGTGTGTTGCTCTA
TGATTGAAGTGGGGGGAGTCGGCGGTTTGTGAGGAGTTCTGTTGGTATAG
TTTTTGAGCTGTGTTTCGTGTGTACTGCATATAGATCTACCCTCTTCGTC
TCCGTGTGCACTTGCTGTTGGTTTGTGTCTATTGGGTTCTGTGGGTGGGT
GGGGCGGTTAGGGCGCGCCCCGCCCCTGCAGAGGTCGTGGCTGGCCGAAC
CGTATCGGTGCTGTTAGTCACCAGCTGCGTTGTCTGCGTGCTAGTATGCT
GTTAGTGCTGCGTTTGTCGCTTTTATGCNTTGATATATATATATGTACAT
CTATGTCGTCGTTTCCCACCGCGTCGTGGCCGACCGTGCCAATCACCAGA
GACCCGATATCGATGGAGCTGTACTCCTAACCCACTCTGGATGGCACACA
CGTCGGCCGCCATGTTGATCACTCTGAGTGAACTACTGTCGACGATATCT
ATCATTCATCCGAATCAAATGACTTAACGCGAGCTACTAATCTATCGCGA
GTGCTGCCACTGCTCGCATTGAGCATGCCTTGCGCCTGCATCTGAGTCAG
TCTCGACGTAGTCTACTATCACCACTGCTATCTATTACCAATCCGCCTCT
TCATATACAGCTTCTAACGCGATCCTTACATACCCATATATACATTACGT
CAATCATCACCGATTCACAATCTACCGGTTCCTCTCATATCGCTCCCATC
CATTACACGCGGTCCGCTTCATTCGCCGGCTCGTATCCCGTGCCCCCTCG
GCTCTGTCTCCGGTGCGGTCCATTGCGTTACCTACACTTCGCGTATCTGC
TACACCTCGCTATCTCTTCACTTATGTTGTTGCTCTGTTAGACGCTACTA
CTCTGCTTGCCTCATCGGTCTATTAGTCATACCACACCGCTATCTATTGG
CGCGTGCTAGTACTTCGTATTGCGTCCTCTCTCGTCTCCTTTCCACCTGC
ACCATCTCGCATATCGTGCTCTTAGTGCTATACGTTATTCACTCCTCACT
CGTCGTCGCGTACCTCGCCGCGTACTTGCCTACGTCATTCATGCTGCCGG
CCTATGTCGTGGGCGCTCTGCAGTGATCGTAATTCTGTGCGTCCTCCTAC
NTTGATGTTCCCNTGCTGCCCACATGCCTCTGCGCGTCGACCTACATATG
CGCGCGCNANTGCTAGAGCCATGGACGTATCGCTATACACTAATTTCTCT
GTATGTTATCGCCCTCGCCACTACTGTGCTATCNTTTCTGATCTCCTATC
TATCATCACCTTACAGCTAGTTCGCGCGTCACATCCATCTCGTACTCATC
GCTCGTGNCGACTCCGCCGTGCCGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_d21.b1 MSMg01no434_d21.b1 CHROMAT_FILE:
MSMg01no434_d21.b1 PHD_FILE: MSMg01no434_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:36 2005
         (554 letters)



>mm_chr8_106074096_106075048
          Length = 953

 Score = 1017 bits (526), Expect = 0.0
 Identities = 544/550 (98%), Gaps = 1/550 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatccaggagtatcgggctcagggtgatgcgcttcccaccgatggatccctatac 64
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 gaattcatccaggaggat-gggctcagggtgatgcgcttcccaccgatggatccctatac 695

                                                                       
Query: 65  ggcttccctgctgacattacacgtttccttttttgcagctctgatttctcattcttccag 124
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 694 ggcttccctgctgacattacacgtttccttttctgcagctctgatttctcattcttccag 635

                                                                       
Query: 125 acattgctgtgactctgtggggggaggcaggagggacttctccctttcctaagaagccgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 acattgctgtgactctgtggggggaggcaggagggacttctccctttcctaagaagccgg 575

                                                                       
Query: 185 cagcaacagggatttgttttccccactcatcatgactgtgcatgtgagcaagactggtaa 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 574 cagcaacagggatttgttttccccactcatcatgactgtgcatgtgagcaagactggtta 515

                                                                       
Query: 245 cttgttgcccaccgtgcacggctgcacagccagatgttgctgattctcaggtctcccagc 304
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 514 cttgttgcccaccgtgcacggctgcacagccagatgttgctgaatctcaggtctcccagc 455

                                                                       
Query: 305 tggctcagagcaggctgcaatcacagaggcaggagtggaacctcctgggcttgtgcttct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tggctcagagcaggctgcaatcacagaggcaggagtggaacctcctgggcttgtgcttct 395

                                                                       
Query: 365 ggaaagtcacctcattcaccagcccactgaagatgtccgttggggcatccagctaacttg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 394 ggaaagtcacctcattcaccagcccactgaagatgtccgttggggcatccatctaacttg 335

                                                                       
Query: 425 ccattggtccctgagttggaggaaagttctacagattggaaggctgcctccaaaggacat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ccattggtccctgagttggaggaaagttctacagattggaaggctgcctccaaaggacat 275

                                                                       
Query: 485 tctctatggactttttctgcctctggttgctaatgcatggtgctctgaatgaatgatttc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tctctatggactttttctgcctctggttgctaatgcatggtgctctgaatgaatgatttc 215

                     
Query: 545 cctgcttcat 554
           ||||||||||
Sbjct: 214 cctgcttcat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 953
Length adjustment: 10
Effective length of query: 544
Effective length of database: 943
Effective search space:   512992
Effective search space used:   512992
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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