Query= MSMg01no434_o04.b1 MSMg01no434_o04.b1 CHROMAT_FILE:
MSMg01no434_o04.b1 PHD_FILE: MSMg01no434_o04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:26 2005
(277 letters)
>mm_chr8_104116371_104117048
Length = 678
Score = 489 bits (253), Expect = e-143
Identities = 269/275 (97%), Gaps = 3/275 (1%)
Strand = Plus / Minus
Query: 5 gaattcacttttttac--aaagtgggggacaggcagcattcttgatatgctacaagagca 62
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gaattcac-tttttacataaagtgggggacaggcagcattcttgatatgctacaagagca 420
Query: 63 aagtgcacagcagatatgggatataagagtggcagtgttgtttgtcggaagaggggatag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aagtgcacagcagatatgggatataagagtggcagtgttgtttgtcggaagaggggatag 360
Query: 123 ttggcatcaattccctttggttagagtgacttattgtggaaatccgtccatgcaaatgag 182
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 359 ttggcatcaattccctttggttagagtgacttattgtggaaatccatccatgcaaatgag 300
Query: 183 agaatttgtaacttttccatgtttactttaggtagaagttttgtttagaaggcaacaact 242
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 299 agaatttgtaacttttccatgtttactttaggtaaaagttttgtttagaaggcaacaact 240
Query: 243 ctgtgtgctcatgtctgggttaattgggatgtctg 277
|||||||||||||||||||||||||| ||||||||
Sbjct: 239 ctgtgtgctcatgtctgggttaattgtgatgtctg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 678
Length adjustment: 9
Effective length of query: 268
Effective length of database: 669
Effective search space: 179292
Effective search space used: 179292
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no434_o04.g1 MSMg01no434_o04.g1 CHROMAT_FILE:
MSMg01no434_o04.g1 PHD_FILE: MSMg01no434_o04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:26 2005
(407 letters)
>mm_chr8_104003219_104004021
Length = 803
Score = 727 bits (376), Expect = 0.0
Identities = 397/406 (97%), Gaps = 4/406 (0%)
Strand = Plus / Plus
Query: 1 attcctatgctaaaggatgaatttatgttaattgttcatttagagtggataaaattgtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcctatgctaaaggatgaatttatgttaattgttcatttagagtggataaaattgtct 260
Query: 61 tctattttagaaggcactgacctcatccgggaatggagagggtagaagttgaaataaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctattttagaaggcactgacctcatccgggaatggagagggtagaagttgaaataaaat 320
Query: 121 gtgagtcttacttttttaaagcctagaataatgaataaaacaaacacgtagtaaaaacac 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgagtcttatttttttaaagcctagaataatgaataaaacaaacacgtagtaaaaacac 380
Query: 181 agacctcggagtcagatgctgtgatggatatagacaatcaaatatcagaaatgcatatga 240
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 agacctcggagtcagatgctgtgatggatatagacaa----atatcagaaatgcatatga 436
Query: 241 gagatctatctcttaggctggacccaggtttcttaaaatacaaatgtagtgtttggatct 300
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 437 gagatctatctctaaggctggacccaggtttcttaagatacaaatgtagtgtttggatct 496
Query: 301 gacaaacattatctaattccactatggggaattcaatgggagctactgtggatttttgtg 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gacaaacattatctaattccactatggggaattcaatgggagctactgtggatttttgtt 556
Query: 361 aggctatactattttcctaacagatccataaatcactcttctggta 406
||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 557 aggctatactattttcctaacagatccataaatcacttttctggta 602
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 803
Length adjustment: 9
Effective length of query: 398
Effective length of database: 794
Effective search space: 316012
Effective search space used: 316012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
