BAC Information

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BAC

Clone NameMSMg01-435A01
Chromosome8 (Build37)
Map Location 58,383,785 - 58,384,296
singlet/doubletsinglet
Overlap geneAdam29
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356, LOC664916
Downstream geneGlra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435A01.T7 (MSMg01no435_a01.b1)MSMg01-435A01.TJ (MSMg01no435_a01.g1)
ACCAG526408AG526409
length745751
length of high quality
(start - end)
492 (47 - 538)512 (77 - 588)
definitionCHROMAT_FILE: MSMg01no435_a01.b1 PHD_FILE: MSMg01no435_a01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:35 2005CHROMAT_FILE: MSMg01no435_a01.g1 PHD_FILE: MSMg01no435_a01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCTCCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA
TTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT
CTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCAC
TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGA
TCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGC
ATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAAT
GCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGT
GATCATAGGTGTGTGGGTTCATTTTTGCGTCTTCAATTCCATTTTCCCTG
CGCTACTTGTTTGTTTTTATACTAGTACTTTGTACCCTATACCATTACTG
CCTTGCCGTAAATCCTTTTTTTTTTCTTTGTCCTTTCTTTCATAAACTTT
TTTATCCTTGCCACTTTTTCCCTTTACCCTTTTCCCTTTTCCCCN
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGATGGGAATACCTTTACAAAT
TCCTCCTCTTACTTGTAGTCAAGGTCCTTAACTTTGAATGGTCAGATTAT
GCTTCATTTTGGTATTCTTGTTTTGTAAAACTAATTTGATTAAAATTAGC
TGACTTCAAATTATTTACAAGATACATTATTTTGAGTGAGACTGACTTAA
TCAGGTAAAGGTCAGAGTATCCATGTGACTTTAGGGAAAAACAAGCAGCA
GTATTGAAACTATCAGTATGGGTAAGCTACTTAAGAATTCAGTGGTATGA
CTACAAACAACTAAATTCTATTAGTATTAATATTTTAGTACGCTAATCAA
CATAAAGTGCCAGAATGAATTGATGTAAGGTGATTACACCTTGATTTTGA
TTTGGGAGACCAAACTAAGAACCCAGCTAAATCCTGACTATCCTCCTCTT
GCTATCCAGAAACTGAAACACATCACCCTCTTCTGCTCATATGTTTGTGC
TAATTTTCTATGTAACTATATAAAATGGATGGATTTGGGAAACTATTGTC
TAATACATCTAATAAGACTCATGGAATAACCTCTACAATCTGTTTGGCTA
CTGTAGTTTCACGGTTATAAAGTTTTAAGGGCTAAAAAACCGCTGGCTTT
CCATAATAAAAAAACCCGGCATAAAAAAAAACCCTTCTACACAAAAAATT
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_a01.g1 MSMg01no435_a01.g1 CHROMAT_FILE:
MSMg01no435_a01.g1 PHD_FILE: MSMg01no435_a01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:35 2005
         (512 letters)



>mm_chr8_58383585_58384496
          Length = 912

 Score =  951 bits (492), Expect = 0.0
 Identities = 507/512 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgatgggaatacctttacaaattcctcctcttacttgtagtcaaggtccttaactttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgatgggaatacctttacaaattcctcctcttacttgtagtcaaggtccttaactttg 260

                                                                       
Query: 61  aatggtcagattatgcttcattttggtattcttgttttgtaaaactaatttgattaaaat 120
           |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| 
Sbjct: 261 aatggtcagattatgcttcattttcgtattcttattttgtaaaactaatttgattaaaaa 320

                                                                       
Query: 121 tagctgacttcaaattatttacaagatacattattttgagtgagactgacttaatcaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagctgacttcaaattatttacaagatacattattttgagtgagactgacttaatcaggt 380

                                                                       
Query: 181 aaaggtcagagtatccatgtgactttagggaaaaacaagcagcagtattgaaactatcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaggtcagagtatccatgtgactttagggaaaaacaagcagcagtattgaaactatcag 440

                                                                       
Query: 241 tatgggtaagctacttaagaattcagtggtatgactacaaacaactaaattctattagta 300
           |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 tatgggcaagctacttaagaattcagtggtataactacaaacaactaaattctattagta 500

                                                                       
Query: 301 ttaatattttagtacgctaatcaacataaagtgccagaatgaattgatgtaaggtgatta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaatattttagtacgctaatcaacataaagtgccagaatgaattgatgtaaggtgatta 560

                                                                       
Query: 361 caccttgattttgatttgggagaccaaactaagaacccagctaaatcctgactatcctcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caccttgattttgatttgggagaccaaactaagaacccagctaaatcctgactatcctcc 620

                                                                       
Query: 421 tcttgctatccagaaactgaaacacatcaccctcttctgctcatatgtttgtgctaattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcttgctatccagaaactgaaacacatcaccctcttctgctcatatgtttgtgctaattt 680

                                           
Query: 481 tctatgtaactatataaaatggatggatttgg 512
           ||||||||||||||||||||||||||||||||
Sbjct: 681 tctatgtaactatataaaatggatggatttgg 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)