BAC Information

Click to search

BAC

Clone NameMSMg01-435B19
Chromosome8 (Build37)
Map Location 54,784,366 - 54,784,774
singlet/doubletsinglet
Overlap geneLOC100040107
Upstream geneLOC676688, Aga, Neil3
Downstream geneVegfc, Spcs3, Asb5, Spata4, Wdr17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435B19.T7 (MSMg01no435_b19.b1)MSMg01-435B19.TJ (MSMg01no435_b19.g1)
ACCAG526492AG526493
length784786
length of high quality
(start - end)		454 (41 - 494)412 (69 - 480)
definitionCHROMAT_FILE: MSMg01no435_b19.b1 PHD_FILE: MSMg01no435_b19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:43 2005CHROMAT_FILE: MSMg01no435_b19.g1 PHD_FILE: MSMg01no435_b19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATGCAGTTGAATCCTTCTTAACAGTCTGCTTTACGGGAACCTTTATTACC
GCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCGCCGGTGA
AACTCCCGTCCCGAGTTTCCTCCCGGGTTTTTTCTTCCCGGATTTTTTCT
CGTCTCGGAATTTCTCGTCCCGGGTTTCTGCACCAATTCTTAATAGCGTT
CTCACACCCGGCCAGGAAAGACGCAACAAACCAGAATCTTCTGCGGCAAA
ACTTTATTGCTTACATCTTCAGGAGCTAGGAGCGCAAACCCCCAGCCCCA
AAAGCGAAAGCCCCTTCAATCTTACATCTTTAGGAGCCAGAGCTCCGGCG
CCGCCAAAGCGCAGAGCGTGCTCTATTGTTTACATCTTTAGGCAGCGAGA
GAGCGCAGGGCGCGCAGAGCCAGAGAGATGCCAGTGAGAGAGAATGGCGG
AAAACCCCGTCCCCTTTAAGGAGGAGTTATCCTTCACTTANGACGCATCA
CTCCCTGATTGGCTGCAGCCCATGGCCGAACTGACGTTTCACGGAAAAGC
AGAGAACAAAGAGTCGTAAAATACCCCTGGGCCTTGCGCAATTATTTGTT
TTACCCTTTTAAAACAGGAGGTCCGCCGCCCCTGTTGCGGTAAATGTGGG
GGCGGTTCCCACCAGTTGGGGCTTCTTTTTTTTTAACCTTAAAAGACTTA
ATTTTTTTTTTTTTTTTCCTTCGCCAAGGAAGAT

CTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTGGCGTTGGTCTGTTTACTTGTCTTTTAGT
AGCTCTTGGAAGACACATCTAAAGGTGATAACATTCTAGATAGGAGTAGA
AGCAAAGAATTAGTGATGTAGTTCAAACACAGTGGACTGAGAACTAGTAA
ATAGGAGACGCTACAGATAGGAGAAATCTAATGTGAGGAACAGTTAGATG
GGAAAACCAAAAGGAGAGAGAGAAAACAAAAATTGAGCCACATATCACAC
AGTGTTTGACATCTGGGATGGTATGATTGCAGGGGTGGCAGCCACAGAAG
AAAACAGAACAAAACAAAACAGAACAAAACAAAACTGCTCTATAACCAGG
AACCGGTGACCAGGATGGTTACAACCTTCAGTGATCTCTTTGAACTTAGG
TATATATTGCTTTCTGTTTTCTTTCTCCTGTGAATCCAAACTTTATTTTT
ATATTACTAACAGTCCTTGATTTACCCTCAGTTTTTTTTCTTTCTCCCTC
TAGTTGTAACCCCTTGAAAACCCTCAAGGGGAACTTTCTGTTACAAAGTT
TTGTGTATTTCCCTGCCCCTTTGCTTTGTGTCTTTTTCTTCCCTCTTCGT
CCCTTCCCCTCCTGTTATCTCATCTCTTCTCTTTCTCCCCTCTCTTTTTT
CTCTCCTTAATGGCGCTCATCTTTCTTGACATCACTACCCTTCTTTTTCC
TTACCTTCCCTTCTTTTTCTTCTCTCTCCCCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_b19.g1 MSMg01no435_b19.g1 CHROMAT_FILE:
MSMg01no435_b19.g1 PHD_FILE: MSMg01no435_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:43 2005
         (412 letters)



>mm_chr8_54784166_54784977
          Length = 812

 Score =  775 bits (401), Expect = 0.0
 Identities = 407/409 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttggcgttggtctgtttacttgtcttttagtagctcttggaagacacatctaaaggtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttggcgttggtctgtttacttgtcttttagtagctcttggaagacacatctaaaggtga 260

                                                                       
Query: 61  taacattctagataggagtagaagcaaagaattagtgatgtagttcaaacacagtggact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taacattctagataggagtagaagcaaagaattagtgatgtagttcaaacacagtggact 320

                                                                       
Query: 121 gagaactagtaaataggagacgctacagataggagaaatctaatgtgaggaacagttaga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 gagaactagtaaataggagacgctacagataggagaaatctaatgtgaggaatagttaga 380

                                                                       
Query: 181 tgggaaaaccaaaaggagagagagaaaacaaaaattgagccacatatcacacagtgtttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 tgggaaaaccaaaaggagagagagaaaacaaaaattgagccacatatcacatagtgtttg 440

                                                                       
Query: 241 acatctgggatggtatgattgcaggggtggcagccacagaagaaaacagaacaaaacaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatctgggatggtatgattgcaggggtggcagccacagaagaaaacagaacaaaacaaa 500

                                                                       
Query: 301 acagaacaaaacaaaactgctctataaccaggaaccggtgaccaggatggttacaacctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagaacaaaacaaaactgctctataaccaggaaccggtgaccaggatggttacaacctt 560

                                                            
Query: 361 cagtgatctctttgaacttaggtatatattgctttctgttttctttctc 409
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtgatctctttgaacttaggtatatattgctttctgttttctttctc 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |