BAC Information

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BAC

Clone NameMSMg01-435D15
Chromosome8 (Build37)
Map Location 80,093,808 - 80,094,272
singlet/doubletsinglet
Overlap geneAI931714
Upstream geneLOC100039211, LOC384847, Nr3c2, Arhgap10, LOC100039235
Downstream geneTmem34, Ednra, EG622803, Ttc29, Pou4f2, LOC100039422, Rbmxrt, Slc10a7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435D15.T7 (MSMg01no435_d15.b1)MSMg01-435D15.TJ (MSMg01no435_d15.g1)
ACCAG526580AG526581
length774765
length of high quality
(start - end)
485 (47 - 531)426 (73 - 498)
definitionCHROMAT_FILE: MSMg01no435_d15.b1 PHD_FILE: MSMg01no435_d15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:53 2005CHROMAT_FILE: MSMg01no435_d15.g1 PHD_FILE: MSMg01no435_d15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTCTTTACCCTTTAAGAAAATGAAACTAAAAACACACAGATTTT
AAAAATGTAACTGCTGAGAGCTTTTTACTTATATATTTTATCATTCCTAC
AACAGTCTAGGGTAGACAACATCGTCATTTTTTTCAGATATGACCCAATA
AAAGCTCTGAGAACTTAACAGCAAGGCCAGCCAGCAAAGTCATTCACTAA
GAGAACGAAGACCTGAATACAAATCCTCAGACTACAGATTCTACAGTTTC
CTGGCCTTGGTCAATCAGATCCTTGATCAAGAGACTACACAAAAATGCAT
TTCCTTCCTGTTTTAAATGGGTAGAGCTTTTCCATTACTTAACTGCTAAG
AACACTGAAACCCAACAAACTGCTTTAAACTTTCTTCCTAGACAGAAAAT
ATTTTTAATACAACAGACTTTCCCCAGAGAAGTTCATGGATCTCAGATTC
TCTTAAGACGGCAAGATTTTGTACTTCTAGGGCTGGATACATTTTAACTT
CCTTATTTACTGGGGGGTGTTGCGTTCTTTTTTTTCCTTTCCATTTCTTC
TTCCCCTTCCTCGTCCCCTTTTTTTTTTCCCCGTCTTTTCCTTCCTTTCT
CTTTTTCTTTTCCTTCCTAGTTATCTGTGTTTTGTTTTCTTATTTTCCCT
CCTTTCCGTTACCCCTCCCCTTGTGTTCTTTCCTGTTTTGTTTCCCCTTA
TTCCTTTTCCGCTATCTTTTTTTA
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCTCTGAAGAAACAGACTGGGAGGAAG
AAGCAGCTCATTACCAGCCAGATAAAGTGCTAGTTAATCGGTCAAGAAAA
AAGCCAAAAGCGGCTGGCGAAAGCCAGCATGCTGTTCAGCCTCCGGGCAG
TCGGCTTCAAGGTCCGCCCTATGCGGAGCCCCCGCCCCGCGTAGTGCGTC
AGCCCTGCGCAGAGAGACAATGCGCAGAGAGACAATGCGCAGAGAGGCAA
TGCGCAGACTCATTCATTCCCAGAGAGGAACAAAGGAAAATACAACAGGC
ATTTCCGGTCTTTGAAGGAGCCGAGGGTGGGCGTGTCCACGCTCCGGTAG
AATACGTGCAGATTAAAGAACTTGCCGAGTCGGTCCGTAAATACGGAACC
AATGCTAATTTTACCTTGNTGCAGTTAGACAGGCTTGCCGGCATGGCACT
AACTCCTGCCGACTGGCAAACGAATGTAAAAGCCGCTCTCCCTAATATGG
GCAAACATATGGAATGGATAGCGCTTTTTTATTATTCTGTACACTTCCAG
TCCCCCTTAAATCCCCCTTGCTTTTGAACTTCCCAACACAAAAACATGGT
TCTTTTCTATTTGCCTATCTTTTCATTACCGCTATATCTGGTGGACTACA
ATTAACATAACTAGGGAGTGAATTCCATTTCCTCCTTTCTTTTTTTTTTT
CTCCACCTCCTCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_d15.b1 MSMg01no435_d15.b1 CHROMAT_FILE:
MSMg01no435_d15.b1 PHD_FILE: MSMg01no435_d15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:53 2005
         (485 letters)



>mm_chr8_80093588_80094472
          Length = 885

 Score =  861 bits (445), Expect = 0.0
 Identities = 460/465 (98%)
 Strand = Plus / Minus

                                                                       
Query: 21  tttaagaaaatgaaactaaaaacacacagattttaaaaatgtaactgctgagagcttttt 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttaagaaaatgaaactaaaaacacacagattttaaaaatgtaactgctgagagcttttt 626

                                                                       
Query: 81  acttatatattttatcattcctacaacagtctagggtagacaacatcgtcatttttttca 140
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atttatatattttatcattcctacaacagtctagggtagacaacatcgtcatttttttca 566

                                                                       
Query: 141 gatatgacccaataaaagctctgagaacttaacagcaaggccagccagcaaagtcattca 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gatatgacccaataaaagctctgagaacttaacagcaaggccagccagcaaagtcattca 506

                                                                       
Query: 201 ctaagagaacgaagacctgaatacaaatcctcagactacagattctacagtttcctggcc 260
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 505 ctaagagaacgaagacctgaatacaaatcctcaaactacagattctacagtttcctggcc 446

                                                                       
Query: 261 ttggtcaatcagatccttgatcaagagactacacaaaaatgcatttccttcctgttttaa 320
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 445 ttggtcaatcagatccttgatcaagagactacacaaaaatgcatttcctttctgttttaa 386

                                                                       
Query: 321 atgggtagagcttttccattacttaactgctaagaacactgaaacccaacaaactgcttt 380
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atggttagagcttttccattacttaactgctaagaacactgaaacccaacaaactgcttt 326

                                                                       
Query: 381 aaactttcttcctagacagaaaatatttttaatacaacagactttccccagagaagttca 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaactttcttcctagacagaaaatatttttaatacaacagactttccccagagaagttca 266

                                                        
Query: 441 tggatctcagattctcttaagacggcaagattttgtacttctagg 485
           |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 265 tggatctcagattctcttaaaacggcaagattttgtacttctagg 221


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)