BAC Information

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BAC

Clone NameMSMg01-435G15
Chromosome8 (Build37)
Map Location 58,374,722 - 58,375,178
singlet/doubletsinglet
Overlap geneAdam29
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356, LOC664916
Downstream geneGlra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435G15.T7 (MSMg01no435_g15.b1)MSMg01-435G15.TJ (MSMg01no435_g15.g1)
ACCAG526724AG526725
length774827
length of high quality
(start - end)
460 (45 - 504)37 (74 - 110)
definitionCHROMAT_FILE: MSMg01no435_g15.b1 PHD_FILE: MSMg01no435_g15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:08 2005CHROMAT_FILE: MSMg01no435_g15.g1 PHD_FILE: MSMg01no435_g15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTAATTGCTTATCCTATATCTAGTGATGTAAATTCAGCAAACATA
TGAAATAATCAAAATTGCAAGCAAGTTAAATATATATTTCTAGTTTTGGT
TCACTTGCATTTCACAAATGAAGAGTGAATAAGTATCTTTCACATGAATA
GTTAGTATTTATATTTGTTCTTTAGTAATATGCCACTGAAATATTTTCCT
TGCTTAATTGGAATTTTTTCTTGCCAAAAAAATGTTGAGTTACCAATATA
TATCAAATACAAGCCAGAAGTATTTAAAACTATTTAATTAAAAAGTTACC
TCTCCTGGGCATATATCCAGAAGATGTTCCAACTAGTAAGAAAGAAACAT
GCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCCAAATGCCCCTCAACAGAGGAATGGATACAAAAAATGTGGTACAT
TCACACAATGGGGTACTACACAGCTATTAAAAAGAATTTATTTATGATAT
TTCTAGGCCAATGTTTGGACTTGGAGGGGCTTATCCTGTATGAGGTAACC
CATCCCCAAAGAAACTCCCATGATATGTTTTCTCTGTAATATGGGTATTT
ACCCCCCAAATTCTTAATCCCCCCAATAAACCCTACCCTTTGTAAAAACC
CTGACCCTTTTAAAAAACAACATAATTAATGGGGTCCCTTTTTCTCCTCC
TTTCACTGTTTCCAAAATCCCCCG
CATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAAAAGTTCAACAAGTTGAAGGGCCCA
GGTGAGGACACCTCAGTCCCAATTGGGAGGGAGAAGAAAGCAACCACAAG
TGGGGAGGGAGGGAGGGACCTGGGAGGGAAAGTATATGGTTTTTTTTTCC
TTTGCTTTTTTTTTTTTTTTCCTTTTTTTTTTTCGTTCCGCCTTTTTTTT
TTTTCTTTTTCTCCCTTTTCTTTTTTTCCCTTTTTTTTCTTTTCTTTTTT
TGTCCGGCCCCTTTTTTTTTTTGGCGGGGGGCCCCCGCGGGGCGGCGTGC
GTTTTTTTTTTTTTCCCTCCTTGTTTTTTTTTTTTTTTTTTTCTTTTTTT
TTTTTTTTTTTTTCCCCCCCTCTTTTTTTTTTTTCCCTTTTTCTTCTCTC
CTTTTTCTTTTTTCTTTTCTTTTTTTTTCTCCCTCTTCTCTCTTTTTTTT
TCTTTCTTTTTTTCTTTTTTCCCCTCTCTTTTTTTCTTTTTCCCCTTTTT
TTTTTTATTTTTTCTCCCTCTCTTTTTTTCCTTTTTTTTTTCCCTTTTTT
TTTTTTTTTTTTTTTCTTCTCCTCTTTTTTTTTTTTTTTTTCCCCCCCTC
CTTTTCCTTTTTTTTTTTTTCTTTTCCTGTTTCCCCTCTTTTTTTTTTCT
CTTTTTTACTTTTCTTCTTTTGCTTTTTTTTTTTCTCCCTTCTTCTTTTT
CTTTTTCTTTCTTTTTTCTTTTGCTCTCCCCCCCCTTTTTTTTTTTTTCT
TCTTTCTTTCCTCTTTTTCTTTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_g15.b1 MSMg01no435_g15.b1 CHROMAT_FILE:
MSMg01no435_g15.b1 PHD_FILE: MSMg01no435_g15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:08 2005
         (460 letters)



>mm_chr8_58374518_58375378
          Length = 861

 Score =  861 bits (445), Expect = 0.0
 Identities = 454/457 (99%), Gaps = 1/457 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctaattgcttatcctatatctagtgatgtaaattcagcaaacatatgaaataa 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctaattggttatcctatatctagtgatgtaaattcagcaaacatatgaaataa 264

                                                                       
Query: 65  tcaaaattgcaagcaagttaaatatatatttctagttttggttcacttgcatttcacaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcaaaattgcaagcaagttaaatatatatttctagttttggttcacttgcatttcacaaa 324

                                                                       
Query: 125 tgaagagtgaataagtatctttcacatgaatagttagtatttatatttgttctttagtaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgaagagtgaataagtatctttcacatgaatagttagtatttatatttgttctttagtaa 384

                                                                       
Query: 185 tatgccactgaaatattttccttgcttaattggaatttttt-cttgccaaaaaaatgttg 243
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 385 tatgccactgaaatattttccttgcttaattggaatttttttcttgccaaaaaaatgttg 444

                                                                       
Query: 244 agttaccaatatatatcaaatacaagccagaagtatttaaaactatttaattaaaaagtt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agttaccaatatatatcaaatacaagccagaagtatttaaaactatttaattaaaaagtt 504

                                                                       
Query: 304 acctctcctgggcatatatccagaagatgttccaactagtaagaaagaaacatgctccac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acctctcctgggcatatatccagaagatgttccaactagtaagaaagaaacatgctccac 564

                                                                       
Query: 364 tatgttcatagcagccttatttataatagccagaagctggaaagaacccaaatgcccctc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tatgttcatagcagccttatttataatagccagaagctggaaagaacccaaatgcccctc 624

                                                
Query: 424 aacagaggaatggatacaaaaaatgtggtacattcac 460
           |||||||||||||||||||||||||| ||||||||||
Sbjct: 625 aacagaggaatggatacaaaaaatgttgtacattcac 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 861
Length adjustment: 10
Effective length of query: 450
Effective length of database: 851
Effective search space:   382950
Effective search space used:   382950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)