BAC Information

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BAC

Clone NameMSMg01-435K20
Chromosome8 (Build37)
Map Location 44,317,826 - 44,485,002
singlet/doubletdoublet
Overlap geneZfp42
Upstream geneEG620772, LOC628212, Triml1, LOC622082, EG622117, LOC100039417
Downstream geneAdam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435K20.T7 (MSMg01no435_k20.b1)MSMg01-435K20.TJ (MSMg01no435_k20.g1)
ACCAG526926AG526927
length788797
length of high quality
(start - end)		308 (41 - 348)379 (71 - 449)
definitionCHROMAT_FILE: MSMg01no435_k20.b1 PHD_FILE: MSMg01no435_k20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:30 2005CHROMAT_FILE: MSMg01no435_k20.g1 PHD_FILE: MSMg01no435_k20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,317,826 - 44,318,129)(44,484,624 - 44,485,002)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATTAATTATTTCCAATTACCACATTATATCCATTATTATAATAAATTGGT
TCTGGCAAGAAACATCTATACATCTAACCAGAGTGGCAGGTTGCTAAGGG
CAGAATAATGACACAAATTTCTTTAATTTTTTATTTTTTTCGTGTTTAAG
CATTTGCCTTCATGTAAATCTGTGTTCTGTTTAGTGTTCCTAGTGTCCAC
ACAGTCAGGGACAGGGCATCAGATTCTTCAGGTTCTTGAGTTATAAGCAG
TTGTAAGCAGATGTGTGGGTGTTGGGGATTGAACCTGGGTCCTCTGGAAT
AAAGAGTGATTTCTCTTAACCGCTCATCTTTCTCTTCATACCTGACAGAA
TTTCACCTTACAACAGCTAATTCTCAATCCGCTGGTCATGACCTTTTGGT
TGCTTTACCGACCCTCTCTCTTCGATTCTCCTGATACTTTCCATTCTACG
CTTATTTCCCTTCCACTTTTCTTCTCCTATTGTTCTCTCTGTCCTCCTAT
ATCCCCTTATCCTTTCTTCATGCGCTTCCCCCCCCCCCCTATTTCACTAT
TTTTTCTTCTCCCCCCCTCCTTTCTTTCCTTATTTTTTTCCCTTCTTTAT
TTTCCCTTCTTTTCCTCTCCCTTTTTTCCTCCTTCTTTCTTCCTTCCTAT
CCCTCCTCATTTCTTTTTTTTCCCCTCTTTAGCAACTCCCCCCCTCTCTT
TTTTTTATCTTTTCCCCTATCATTCTTTTCTATCGTCG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGATATTTGTAACAAACTCAAGTTTGAAT
TGAAAACTTAGGTTCTTTCCTCGGTACACTGCAGTAACGGATACTAGCCT
CAGCAATTAACACTTTAAATCATCAAAATCAGATAGGAATCTTGGTTGGT
TCCACCTGTGTCTGGAGACAACACTGTGCTCTGGAAGGCTGGTTGGTCAG
AAGTCATGGGTTAGCAAGAAGAGCAAGAAGGCTGCATAATTTCCATACAC
TGTGATGTCCCTTGAATTATTAAACATAAACATCTAAGATGTTAAGGAAA
ATGGTGTTTCCATTTTTCTTTTAGTTGATATATATTAATATGTACAATAT
TATATACATGTACAAATATACATGTATTGTATATGTATATATATTATTGG
ATAATGGTACAACCCTCTCTTCTTCCTAGATTATGTCCATTATTATATAC
TCCGCTTTTTCCCGCCTCTTCTTTTTTCTATCCTCCTGTCATCCTCATTT
TATATCTTCTTCTTAGATTTATTTTTATTTTCTCTTCTTTTTCTCTCTTT
ATTCTTCACTCCCCATTTATCTTCCTCCTCTTCACTTCTCCCCCCTTCCC
CACTTTTTTTCCCCCCTACACCCTTATTACCACACCCTACTTCTTACCGT
GTAACTCCTCCTACAGATATTTTTATTTGTCTTCCCCTTATAACTATTCT
CACATATCCATCATCCGTTATTACTTCCTCTCCCTCATTTTTTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_k20.b1 MSMg01no435_k20.b1 CHROMAT_FILE:
MSMg01no435_k20.b1 PHD_FILE: MSMg01no435_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:30 2005
         (308 letters)



>mm_chr8_44317622_44318329
          Length = 708

 Score =  565 bits (292), Expect = e-165
 Identities = 301/304 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattaattatttccaattaccacattatatccattattataataaattggttctg 64
           |||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattaattagttaaaattaccacattatatccattattataataaattggttctg 264

                                                                       
Query: 65  gcaagaaacatctatacatctaaccagagtggcaggttgctaagggcagaataatgacac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcaagaaacatctatacatctaaccagagtggcaggttgctaagggcagaataatgacac 324

                                                                       
Query: 125 aaatttctttaattttttatttttttcgtgtttaagcatttgccttcatgtaaatctgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaatttctttaattttttatttttttcgtgtttaagcatttgccttcatgtaaatctgtg 384

                                                                       
Query: 185 ttctgtttagtgttcctagtgtccacacagtcagggacagggcatcagattcttcaggtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttctgtttagtgttcctagtgtccacacagtcagggacagggcatcagattcttcaggtt 444

                                                                       
Query: 245 cttgagttataagcagttgtaagcagatgtgtgggtgttggggattgaacctgggtcctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttgagttataagcagttgtaagcagatgtgtgggtgttggggattgaacctgggtcctc 504

               
Query: 305 tgga 308
           ||||
Sbjct: 505 tgga 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no435_k20.g1 MSMg01no435_k20.g1 CHROMAT_FILE:
MSMg01no435_k20.g1 PHD_FILE: MSMg01no435_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:30 2005
         (379 letters)



>mm_chr8_44484496_44485274
          Length = 779

 Score =  717 bits (371), Expect = 0.0
 Identities = 377/379 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagatatttgtaacaaactcaagtttgaattgaaaacttaggttctttcctcggtacact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aagatatttgtaacaaactcaagtttgaattgaaaacttaggttctttcctcggtacact 448

                                                                       
Query: 61  gcagtaacggatactagcctcagcaattaacactttaaatcatcaaaatcagataggaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gcagtaacggatactagcctcagcaattaacactttaaatcatcaaaatcagataggaat 388

                                                                       
Query: 121 cttggttggttccacctgtgtctggagacaacactgtgctctggaaggctggttggtcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cttggttggttccacctgtgtctggagacaacactgtgctctggaaggctggttggtcag 328

                                                                       
Query: 181 aagtcatgggttagcaagaagagcaagaaggctgcataatttccatacactgtgatgtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aagtcatgggttagcaagaagagcaagaaggctgcataatttccatacactgtgatgtcc 268

                                                                       
Query: 241 cttgaattattaaacataaacatctaagatgttaaggaaaatggtgtttccatttttctt 300
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cttgaattacaaaacataaacatctaagatgttaaggaaaatggtgtttccatttttctt 208

                                                                       
Query: 301 ttagttgatatatattaatatgtacaatattatatacatgtacaaatatacatgtattgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ttagttgatatatattaatatgtacaatattatatacatgtacaaatatacatgtattgt 148

                              
Query: 361 atatgtatatatattattg 379
           |||||||||||||||||||
Sbjct: 147 atatgtatatatattattg 129


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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