Query= MSMg01no436_b06.b1 MSMg01no436_b06.b1 CHROMAT_FILE:
MSMg01no436_b06.b1 PHD_FILE: MSMg01no436_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:03 2005
(486 letters)
>mm_chr8_15659127_15660016
Length = 890
Score = 855 bits (442), Expect = 0.0
Identities = 472/484 (97%), Gaps = 4/484 (0%)
Strand = Plus / Minus
Query: 4 ggaattctgagagctggagaaatagtcttctcctgggacaagcacatcaattggttatcc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 ggaattctgagagctggagaaatagtcttctcctgggacaagcacatcaattggttatcc 785
Query: 64 aacaccatatgccaatccttaaaacatatacatacaaataacattgaacagtctaaacag 123
||||||||||| ||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 784 aacaccatatgtcaatccttaaaacatatacatacaagtaacactgaacagtttaaacag 725
Query: 124 actgtgttttcacacaccaccactaccaccaccaccaaaaacagtagttgtgaatttaaa 183
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 724 actgtgttttcacacaccaccactaccaccaccaccaaaaacaatagttgtgaatttaaa 665
Query: 184 agagagtaggagctgggctgga----ggagggggaagcacagagggagcaaatggaatgg 239
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 664 agagagtaggagctgggctggaggggggggggggaagcacagagggagcaaatggaatgg 605
Query: 240 gtaaatgaggtaattacataataatatcaaataatttaaaagtgaaacatttgtcatagc 299
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 604 gtaaatgaggtaattacataataatatcaaatactttaaaagtgaaacatttgtcatagc 545
Query: 300 aacagaaagatgcatgcaccctaaaccccaagatacttcacggaccctctgtctagctgc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aacagaaagatgcatgcaccctaaaccccaagatacttcacggaccctctgtctagctgc 485
Query: 360 cctgtaacatcaagtgaattgacagaggtaagtttcccgtcatgcctttgtgtccctaag 419
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 484 cctgtaacatcaagtgaattgatagaggtaagtttcccgtcatgcctttgtgtccctaag 425
Query: 420 tccacccagttattcccaggttcagtttcttctgcagtggaaccaagtttgatttttgtt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tccacccagttattcccaggttcagtttcttctgcagtggaaccaagtttgatttttgtt 365
Query: 480 tctg 483
||||
Sbjct: 364 tctg 361
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 890
Length adjustment: 10
Effective length of query: 476
Effective length of database: 880
Effective search space: 418880
Effective search space used: 418880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_b06.g1 MSMg01no436_b06.g1 CHROMAT_FILE:
MSMg01no436_b06.g1 PHD_FILE: MSMg01no436_b06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:03 2005
(442 letters)
>mm_chr8_15428281_15429122
Length = 842
Score = 816 bits (422), Expect = 0.0
Identities = 437/442 (98%)
Strand = Plus / Plus
Query: 1 catttgtttaacaaactgagttctggtaaatatttactgcacatttttgtggatcaggca 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 catttgtttaacaaactgagttctggtaaatatttactgcacatttctgtggatcaggca 260
Query: 61 ctcttttggaatttgggacatgtgaataaacaaaccagtgagaaacgtaaacatgagtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcttttggaatttgggacatgtgaataaacaaaccagtgagaaacgtaaacatgagtga 320
Query: 121 tcaagacgataaactgtctctgtggtaatgtgtgtgtaattcagcatagaatctaaatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaagacgataaactgtctctgtggtaatgtgtgtgtaattcagcatagaatctaaatga 380
Query: 181 tctatgaaagtaggagatagaattaagccaagtcaaggggtttcaggctgcagatgaggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctatgaaagtaggagatagaattaagccaagtcaaggggtttcaggctgcagatgaggc 440
Query: 241 tagggcactgtgaggtttcaggattggggtgctccaaatcaaagtgatgatgacagtgac 300
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 tggggcactgtgaggtttcaggattggggtgctacaaatcaaagtgatgatgacagtgac 500
Query: 301 tatcatctattcttatgcagaacacaggaaggaccaaggttccttggagagatagtcact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatcatctattcttatgcagaacacaggaaggaccaaggttccttggagagatagtcact 560
Query: 361 gagtccaaagcacagtatctgagtgctggaggctccttgccacagtgccactaagggaga 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagaccaaagcacagtatctgagtgctggaggctccttgccacagtgccactaagggaga 620
Query: 421 cgaaggaggaggaggaggagga 442
|||||||||||||||||||||
Sbjct: 621 tgaaggaggaggaggaggagga 642
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
