BAC Information

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BAC

Clone NameMSMg01-436E08
Chromosome8 (Build37)
Map Location 47,571,872 - 47,572,140
singlet/doubletsinglet
Overlap geneAcsl1
Upstream geneSorbs2, Pdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt, LOC667337
Downstream geneMlf1ip, Ccdc111, Casp3, Irf2, Enpp6, Stox2, 4930448N21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436E08.T7 (MSMg01no436_e08.b1)MSMg01-436E08.TJ (MSMg01no436_e08.g1)
ACCAG527378AG527379
length751749
length of high quality
(start - end)
274 (49 - 322)449 (79 - 527)
definitionCHROMAT_FILE: MSMg01no436_e08.b1 PHD_FILE: MSMg01no436_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:18 2005CHROMAT_FILE: MSMg01no436_e08.g1 PHD_FILE: MSMg01no436_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCC
GCGGAATTCTTGTATATCTCTAGACGGACAGGCTTTCTCCAGTCCCTGAC
TCAGTCTTCATATTACAAGTCTCACCAATGTTGTAGTGTGTATTCTCGGC
CACTTTGAGCGCCATCATGTAGGGCAAGCACCTGGTCCTGGAACACCTCT
CCTGAACCCACTCTCGGGTCCCTGTAAAAGAACTGACGGACTTTTTATAA
TACAAAGAGGAATAGGTAGGTAATTACTTCTTCATGTTGGATCTTCCAAG
GCAAATTGCTGAATATCGTTCTTTTATTAAACACTTTAAAAAGCCATCAA
GGATATAAATATGGATCCATAATTAAATGTGTCTCTTTAATGGTGGGAGA
TGTTGCCTTTAGTGATAGATGCATGTTTTCAAAAATGATCGAACTTAAAT
AAGTTAAATGAAAGAGAAAAACATCAAGATACTTCACAGAAAACTGTAGA
GCCTGAAAAGGTGGTCTAGAAGATGCTCCCGAGCCAAGCATGGTGGTATA
TTTCTTAAGTCCCAGAACTCTGCTAGGGAGACTAGGCAGGAGGATTGAGG
CCAGCCTGGGCCATGTAGCAAGATCTTCAATAAATTGCTTGTTGGGGGGA
AAGATAGATAGTCTACCCCTAATCACATATCCCTAAGCAACTTAGATCAA
TCTTCTGACTTATCTGTATATGAACTACATGTATATCGCTTTTTTTTTTC
G
NCCACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAATGTAGAAACACAACTCC
TGTACTATCTTTAAATAAAAGGGAAACCCCCACAAAAGCGGGGGCTTGGA
AAGACACATGGCTCTGTGATTAAGAGCTTGTGCTACTGTTCTTGCAGAGG
ACGCAGGATCCATTCCCAGCTCCCGCACTGGGGCTCACATCTGCCTGTTA
CTCCAGTTTCAGAGTACCTGACACCCTCTTCTGACCTCTGAGGGCATCAG
ACAAGCACACAGTGCACATATTTATTTCCAAGAAAAACATCCATACATAT
GAAATCAAGTAAATCCTGAGACAGAAATCTTCCTATCATAGATGTTTTTA
TTTGCGTGAACGTGTGTGACTGTGTCAGTGAGTGTTATGTGTTCATGCCT
GTGGAGGCCAGAAGAGAGCATCGCATCCCTTACAGCGAGAGTTATAGGTC
ACTGTGAGCCACCTGATGCGAGTGCCGGGTCCTTTGGAAGAGCAGCCAGT
ACTTTTAACTGCTGAGCCCAAAACATGAAGCCTTTTTTTTAATAAATGCT
CCACCAATCTCATTCGACATTTTGGATCATTATGTCTATAGACCTTATTT
TTCTTTAGTTTTCCTGAAAATCTCTTTCCTAATATTTACTCTCTTCATCT
TATCCTATATGACCGGCTCCTCTTTTATCTTTTCTTCTCTGTACCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_e08.b1 MSMg01no436_e08.b1 CHROMAT_FILE:
MSMg01no436_e08.b1 PHD_FILE: MSMg01no436_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:18 2005
         (274 letters)



>mm_chr8_47571667_47572340
          Length = 674

 Score =  458 bits (237), Expect = e-133
 Identities = 261/269 (97%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcttgtatatctctagacggacaggctttctccagtccctgactcagtcttcatat 65
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcttgtatatcactagacggacaggctttctccagtccctgactcagtcttcatat 265

                                                                       
Query: 66  tacaagtctcaccaatgttgtagtgtgtattctcggccactttgagcgccatcatgtagg 125
           |||||||||||||||||||||| |||||| |||||||||||||||||  |||||||||||
Sbjct: 266 tacaagtctcaccaatgttgtattgtgtactctcggccactttgagcatcatcatgtagg 325

                                                                       
Query: 126 gcaagcacctggtcctggaacacctctcctgaacccactctcgggtccctgtaaaagaac 185
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gcaagcacctagtcctggaacacctctcctgaacccactctcgggtccctgtaaaagaac 385

                                                                       
Query: 186 tgacggactttttataatacaaagaggaataggtaggtaattacttcttcatgttggatc 245
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgatggactttttataatacaaagaggaataggtaggtaattacttcttcatgttggatc 445

                                        
Query: 246 ttccaaggcaaattgctgaatatcgttct 274
           ||||||||||||||||||||||| |||||
Sbjct: 446 ttccaaggcaaattgctgaatattgttct 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)