Query= MSMg01no436_f21.b1 MSMg01no436_f21.b1 CHROMAT_FILE:
MSMg01no436_f21.b1 PHD_FILE: MSMg01no436_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:25 2005
(569 letters)
>mm_chr8_16766031_16766993
Length = 963
Score = 948 bits (490), Expect = 0.0
Identities = 548/570 (96%), Gaps = 8/570 (1%)
Strand = Plus / Plus
Query: 1 gttataacgttcactggtgctgtacaaaatggaaaccgagtcacttttacacaggctgaa 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttataccgttcactggtgctgtacaaaatggaaaccgagtcacttttacacaggctgaa 260
Query: 61 ttctagacccttaaaattgactttctgagaaatctaatcgcccttaggttcagatgtgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ttctagacccttaaaattgactttctgagaaatctaatcgcccttaggttcagatttgac 320
Query: 121 tgtctttgagaacaagatcttttaaaaactgatcctcagatctggctttgatccaatgat 180
|||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 321 tgtctttgaggacaagatcttttaaaaactcatcctctgatctggctttgatccaatgat 380
Query: 181 gctcctataaatcctaatgcggacaccaacatgcttaagtcccaagagaaaaagacacag 240
|||||||||||||||||||||||| ||||||| | |||||||||||| ||||||||||||
Sbjct: 381 gctcctataaatcctaatgcggacgccaacattcctaagtcccaagacaaaaagacacag 440
Query: 241 aagagaaacccgaagaaaacagcatgtggagatggaa-aggtggacatgctcacctagaa 299
|||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||
Sbjct: 441 aagagaaacccgaagaaaacagcatgtggagaaggaacag-tggacatgctcacctagaa 499
Query: 300 tggaatgagcaggggtgactgggactagacagaaccctgacagtcagacagagaaaggca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tggaatgagcaggggtgactgggactagacagaaccctgacagtcagacagagaaaggca 559
Query: 360 ccacagacaaataacgaagatggaaacttcagctttttcatcttcctgacccgagaaagg 419
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 560 ccacaggcaaataacgaagatggaaacttcagctttttcatcttcctgaccc----aag- 614
Query: 420 gttagtggtctcacaccttttctcactttattctctcactgtcagtgcccgctcctggct 479
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 615 -ttagtggtatcacaccttttctcactttattctctcactgtcagtgccccctcctggct 673
Query: 480 gtccagttcaattggttaggtatgttcaaggaatggtccaaactatcacctcaagctgtg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gtccagttcaattggttaggtatgttcaaggaatggtccaaactatcacctcaagctgtg 733
Query: 540 gactgaccagtttcctttccttaatctaga 569
|||||||||| |||||||||||||||||||
Sbjct: 734 gactgaccagcttcctttccttaatctaga 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 963
Length adjustment: 10
Effective length of query: 559
Effective length of database: 953
Effective search space: 532727
Effective search space used: 532727
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_f21.g1 MSMg01no436_f21.g1 CHROMAT_FILE:
MSMg01no436_f21.g1 PHD_FILE: MSMg01no436_f21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:25 2005
(586 letters)
>mm_chr8_16905837_16906822
Length = 986
Score = 1125 bits (582), Expect = 0.0
Identities = 585/586 (99%)
Strand = Plus / Minus
Query: 1 atctaatcctcattcctatggagaagaaaggaacttccttccccgcattagtaagcctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 atctaatcctcattcctatggagaagaaaggaacttccttccccgcattagtaagcctta 727
Query: 61 ggcatcatctttgtcttaatcaaggtcctgcttttgaagtgaaatttagccatccagtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ggcatcatctttgtcttaatcaaggtcctgcttttgaagtgaaatttagccatccagtgt 667
Query: 121 gaatgacaactccaatgtctcagcactacctctatgggaatctgtattcttggcctttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gaatgacaactccaatgtctcagcactacctctatgggaatctgtattcttggcctttaa 607
Query: 181 aagaatccagtaactgatatctccaactccagtagctcctggaataaaataaagtgggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aagaatccagtaactgatatctccaactccagtagctcctggaataaaataaagtgggca 547
Query: 241 ttatgtcactgatggaccatacctagccaggaagcaacagtgccagaagccaaagactga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttatgtcactgatggaccatacctagccaggaagcaacagtgccagaagccaaagactga 487
Query: 301 tgctaagaaacatttcatgctacacaggtgctgggatagaagacttttgtgtgacttgcg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tgctaagaaacatttcatgctacacaggtgctgggatagaagacttttgtgtgacttgcg 427
Query: 361 gggtttgcaaattgccttccagggttctttggttttaattctttccctagtcctgtgaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gggtttgcaaattgccttccagggttctttggttttaattctttccctagtcctgtgaga 367
Query: 421 tggaagcagttgtatgctatctcacagaacagagctcgatgtagaatcaccaagtaaggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tggaagcagttgtatgctatctcacagaacagagctcgatgtagaatcaccaagtaaggg 307
Query: 481 gctcacagccgtgaagccagcactgacagccccaggacctgcttccagaaacacaggttc 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 306 gctcacagccgtgaagccagcactgacagccccaggacctgcttccagaaacactggttc 247
Query: 541 tggggttcatactctcccccaacaacaacacagaacctttgagaag 586
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tggggttcatactctcccccaacaacaacacagaacctttgagaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
