Query= MSMg01no437_c21.b1 MSMg01no437_c21.b1 CHROMAT_FILE:
MSMg01no437_c21.b1 PHD_FILE: MSMg01no437_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:28 2005
(286 letters)
>mm_chr8_13193997_13194682
Length = 686
Score = 391 bits (202), Expect = e-113
Identities = 254/278 (91%), Gaps = 19/278 (6%)
Strand = Plus / Minus
Query: 1 caagatttccatgccagtgcctctgcccgctgacctgtctttccaacccattcaaagtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 caagatttccatgccagtgcctctgcccgctgacctgtctttccaacccattcaaagtta 246
Query: 61 tttttttatgatttgtctgttgaacataattgatgccttgggtcctctccttctcctcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 245 tttttttatgatttgtctgttgaacataattgatgccttgggtcctctccttctccttct 186
Query: 121 ccttctccttctccttctccttctccttctccttctccttctccttctccttctccttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ccttctccttctccttctccttctccttctccttctccttctccttctccttctccttct 126
Query: 181 ccttctccttctccttccctcc-cctcc-cctcc-cctcccccttctcttcctctccttt 237
|||||||||||||||| |||| |||| ||||| ||||| ||| ||| ||||| ||
Sbjct: 125 ccttctccttctcctt--ctccttctcctcctcctcctcctcctcctcctcctc-cc--- 72
Query: 238 cctcccccttttttttcctcc-cct-cccctcccctcc 273
||||||| |||||| ||| ||||||||||||
Sbjct: 71 cctcccc--------tcctcctcctccccctcccctcc 42
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 90
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no437_c21.g1 MSMg01no437_c21.g1 CHROMAT_FILE:
MSMg01no437_c21.g1 PHD_FILE: MSMg01no437_c21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:28 2005
(507 letters)
>mm_chr8_13042978_13043884
Length = 907
Score = 888 bits (459), Expect = 0.0
Identities = 492/507 (97%), Gaps = 7/507 (1%)
Strand = Plus / Plus
Query: 1 aagataaagccacagcgctcactgatagtgggtatcagtatacctgtggccagtggctgg 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 208 aagataaagccacagcgctcactgatagtgggtatcagtatacctgtggc-------tgg 260
Query: 61 atgtactgatagaaggcagggctggaggctttggaaccaccagagggtccaaattcatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtactgatagaaggcagggctggaggctttggaaccaccagagggtccaaattcatgt 320
Query: 121 actttgaaatagtgtgaatttctcagaaagccatataaagtggctcactgctgcaggaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actttgaaatagtgtgaatttctcagaaagccatataaagtggctcactgctgcaggaaa 380
Query: 181 ccagccctgagtacttaactgagaaagaaaaaacttattgtcaaatgaaataccttatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagccctgagtacttaactgagaaagaaaaaacttattgtcaaatgaaataccttatgt 440
Query: 241 cttgcataagatataaatgtttatagcagctccaattgtagttatcccaagctggaaaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgcataagatataaatgtttatagcagctccaattgtagttatcccaagctggaaaca 500
Query: 301 gcatgagggtcgcccactgttgggtgaaggtaagcacagtgcaagccagcaaccggaaga 360
|||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 501 gcatgaaggtcgcccactgttgggtgaaggtaagcacagtacaagccagcaacaggaaga 560
Query: 361 tcagaatggggtctgcagttgcctggatgtgctctggaggcatgacgctgaaggaagaga 420
||| |||||||||| |||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 561 tcaaaatggggtctacagttgcctggacgtgctctggaagcatgacgctgaaggaagaga 620
Query: 421 gtttcacaagcttgcttcacgtatgattttatttatcagacattctttaaaagctattgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtttcacaagcttgcttcacgtatgattttatttatcagacattctttaaaagctattgc 680
Query: 481 tttattgaagatcagtcaatttgtggt 507
|||||||||||||||||| ||||||||
Sbjct: 681 tttattgaagatcagtcagtttgtggt 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
