BAC Information

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BAC

Clone NameMSMg01-438E09
Chromosome8 (Build37)
Map Location 113,789,114 - 113,789,588
singlet/doubletsinglet
Overlap genenone
Upstream geneHydin, LOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1
Downstream geneRfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438E09.T7 (MSMg01no438_e09.b1)MSMg01-438E09.TJ (MSMg01no438_e09.g1)
ACCAG528907AG528908
length756791
length of high quality
(start - end)
465 (69 - 533)99 (118 - 216)
definitionCHROMAT_FILE: MSMg01no438_e09.b1 PHD_FILE: MSMg01no438_e09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:00 2005CHROMAT_FILE: MSMg01no438_e09.g1 PHD_FILE: MSMg01no438_e09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGACACATCCGCGGAATTCC
AGTGTTCTTGCGGAAAAGGCAGGAGGATTAAGGAGTTCTGTGTCACCTTA
CTACATACTGAGTTTGGGGCAAGCCTGGGCTACATGAGACCCTGTCTCAA
ACAAAACAAAACAAAACAAAACAAAACAAAACATCCCCACCACCATCATC
CTGACAAAGGATAAATTTCAAGAATTGATTGTACCCAGAAACAGTTGGGA
AACGATGACACTGAGATGGAAAGAAGTAGGCACAGAATCTAAACCAATGA
AGATCTGGGACCCGAGTTATTCATGTGGCCTTGACCCCATTTCTTCCCCG
AAAGGGGATGCCCTAACTGGTAAGATAATGTGAATGCACTTCAAATCACG
AGGCAAATATGCTTTTCCTTCAACTCCCCCTCTTAGTGTCAAGGAAAAAC
ATCGGATACTAACTTTTGATTTCCCCAGAAGAGGAATTACAGTTAGGTGT
GGCGGAGGCTCATGCCTGCAATTCCAACTCCTGAGGTGAAGGCAGAATGA
TCAGTTCCAAGTCATTTTTAATGACAGCCTGGGGTGAAGCCAGTCATAGG
TGGCATGCCCCTTTAATCCCAGAACTCTATGGTCATAAATATAAGGCACT
CCTGATATTAATGCTAACCTGATCTGCGAACTGGTTTTCCGAAACATTCG
TAATTAACTTCTGAAAAATCTAACTTCCCACTTAAATATATTAATCTTTT
CCCTAT
TTTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTCAGAAAATACACAGCCAGCTCATCTTCCTCTGTTGTCATCCTC
TTTACCAGTATAGTTGCATCTTGTGGTCATGAGCTGAACAAAAGTGGTTA
CATCCTGCCCATGTTCTTTTACTAATTTTTGTTTGACTCAGTCTAGTTTT
AGATTTGCAGGGCTTAAGAGACAGCCCAGCAGTTAAGAGCACTGGCTACT
CTTACAGAGGACCAGGGTTTGGTTCCCAGCACCCATATGGCAGGTTGTAG
CCATCCACCTATTTTCTATTTGGGTCTGTAGCTCCAGATCCAGCAGATCT
GATACCCTCTTTTGGTCTCTAGTCATGAAGCACACATGCGTTATGCATAT
ATGTGTAGAACAAAACACTCAATTATGTAACAATAAATACTTTTTACAAA
ATTATCATGGTAGAGTTCATACCTGTTTGTTACTTCCAGTAATGACTCCC
TCCCACTGTAATCCAGTACTTTCTGTTGACTTAAGATCACTTTTCCTATT
TATTACACTATTAATATCACCTTATTGTATTTGCGTGTCTTTACATGTGC
CCTTTTATTTTTCCTCCTATTTTCTTTCCCCTTTTTTCCCCCCCTCGTAT
CTTCTTTATCTTCATTTCCTTCTTACTTATCTATCTACCCCCTTATTCTT
TTTCTCCCCTTTTCTTTCATCATCTCCTTTTTTATTTTTTCTTCTTTCTC
TCTTCATGTTTATTCTTATCTCCTTTCTTCCTCTCTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_e09.b1 MSMg01no438_e09.b1 CHROMAT_FILE:
MSMg01no438_e09.b1 PHD_FILE: MSMg01no438_e09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:00 2005
         (465 letters)



>mm_chr8_113788799_113789663
          Length = 865

 Score =  830 bits (429), Expect = 0.0
 Identities = 459/475 (96%), Gaps = 10/475 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcaggaggattaaggagttctgtgtcaccttactacatactgagtttggggcaagcctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 gcaggaggattaaggagttctgtgtcaccttactacatactgagtttggggcaagcctgg 731

                                                                       
Query: 61  gctacatgagaccctgtctc----------aaacaaaacaaaacaaaacaaaacaaaaca 110
           ||||||||||||||||||||          ||||||||||||||||||||||||||||||
Sbjct: 730 gctacatgagaccctgtctcaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaaca 671

                                                                       
Query: 111 aaacatccccaccaccatcatcctgacaaaggataaatttcaagaattgattgtacccag 170
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 670 aaacatccccaccaccatcatcctgacaaaggataaatttcaagaattggttgtacccag 611

                                                                       
Query: 171 aaacagttgggaaacgatgacactgagatggaaagaagtaggcacagaatctaaaccaat 230
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 610 aaacagttgggaaacgatgacacggagatggaaagaagtaggcacagaatctaaaccaat 551

                                                                       
Query: 231 gaagatctgggacccgagttattcatgtggccttgaccccatttcttccccgaaagggga 290
           |||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||
Sbjct: 550 gaagatctgggacccgagttacccaagtggccttgaccccatttcttccccgaaagggga 491

                                                                       
Query: 291 tgccctaactggtaagataatgtgaatgcacttcaaatcacgaggcaaatatgcttttcc 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tgccctaactggtaagataatgtgaatgcacttcaaatcacgaggcaaatatgcttttcc 431

                                                                       
Query: 351 ttcaactccccctcttagtgtcaaggaaaaacatcggatactaacttttgatttccccag 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 430 ttcaactccccctcttagtgtcaaggaaaaacatcggatactaacttttgatttccccat 371

                                                                  
Query: 411 aagaggaattacagttaggtgtggcggaggctcatgcctgcaattccaactcctg 465
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aagaggaattacagttaggtgtggcggaggctcatgcctgcaattccaactcctg 316


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 6
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)