BAC Information

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BAC

Clone NameMSMg01-438J20
Chromosome8 (Build37)
Map Location 73,800,871 - 73,801,118
singlet/doubletsinglet
Overlap geneMyo9b
Upstream geneHomer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik
Downstream gene2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438J20.T7 (MSMg01no438_j20.b1)MSMg01-438J20.TJ (MSMg01no438_j20.g1)
ACCAG529167AG529168
length795784
length of high quality
(start - end)		363 (43 - 405)248 (71 - 318)
definitionCHROMAT_FILE: MSMg01no438_j20.b1 PHD_FILE: MSMg01no438_j20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:27 2005CHROMAT_FILE: MSMg01no438_j20.g1 PHD_FILE: MSMg01no438_j20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTTATTTCTGAGCCCCATTTTTAATGAGGTTATTTGATTTTCTG
GAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTGTTTTTG
TCTTATTGACTGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAGG
TCCCATTTGTTGATTCTCCATCTTACAGCACAAGCCATTGCTGTTTTATT
CAGGAATTTTTCAACTGTGCCCATATCTTCGAGGTTTTTCATCACTTTCT
CCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCTAC
TTATATTTGACCTTACCACAATGAGATAGGAATGTATCAACTTTGCATTC
TTCTACATGATAATATCCTGCTGTGCCCTATTTCTTTATTGTCATTTTGT
TACGTTTACATTTCTTTTCTTTTTCTCTTTTTCTTTTTTTTTCCTCTGCT
ATCTTTTTTTTTTTTTTCTTTCTTTCATCCTTTTTTTTTATTTTTTGTCT
GACTTTATCCTTTTTTTTTTATATGCCCTATTGTCCTTCTTTTTTTTTTC
TTTTCTTTACATTTAATTCTCTTTTCTTCTTTTTCTTTTTTTTCTTTTTT
TTTCTTTTCCTTTCTTTTTATTTTCTCTTTTTCATCCTTTTTGCCTTACT
TTTCTCCTGCTTTGTGTTTAATATCATCATTAACTTATTCTTCTC

TTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTACCTCTCTGGATTCATCCTGAGCATAGG
AGGAGAAAGGTCCAGAAAATTCCCTCACAGGGAGCTTCCCAGGACTGATG
TGGCCAACCAACTTACCCACTCCGTAAAGTGTTTACTCAACAGAGAAGAA
ACTGGATGGTCATGGGGGGATGATCAGTCTTCCCAAAGCCCTCTATTAGA
TGATAGCCAAGTTTGTAACTGACCTAGTGTTAAGGGCTGAGATGCCTCTA
CCCTTTCATCATGCTCTTAACTCCTAAAGTCTGGGATACTTAAAAACTTT
TATTTTTTTGTTCTTTTCTGAGACAAGTCTTACTATACAGCCTAGGCTGG
TAACAACCTCAGGACCTTCCTGTCTCCTCACTTGAATGCTGGGATTTCAT
GTGAGGCCATTCTGAGCTCCCCATCCCAGCACTTTAAAAGATGACTACTT
CAGGAGAAGATTAAAGTGAAACAAGATTTCCCCCCACATGGATCTTCATT
TGTGTGGAAGTAGGACACCGGGACCAGCTCATAAAAATATAACAGGATAT
CATACGGTAATATGGCCCCCTATGAACCCTGGGGTAACATTATTCTGGCC
CCCGCTTGTTTTTTTTTTTGGCCCTACTTGGACTTTGGGACTTTCTCTCT
CTTTAATATCTCCCGGGCTCTAAAATCCTTCGTCGTCCGTTCATTCCCAT
CCTGTATTTATGCAACCCAGCTTTATCTTATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_j20.g1 MSMg01no438_j20.g1 CHROMAT_FILE:
MSMg01no438_j20.g1 PHD_FILE: MSMg01no438_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:27 2005
         (248 letters)



>mm_chr8_73800671_73801318
          Length = 648

 Score =  480 bits (248), Expect = e-140
 Identities = 248/248 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttacctctctggattcatcctgagcataggaggagaaaggtccagaaaattccctcacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttacctctctggattcatcctgagcataggaggagaaaggtccagaaaattccctcacag 389

                                                                       
Query: 61  ggagcttcccaggactgatgtggccaaccaacttacccactccgtaaagtgtttactcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ggagcttcccaggactgatgtggccaaccaacttacccactccgtaaagtgtttactcaa 329

                                                                       
Query: 121 cagagaagaaactggatggtcatggggggatgatcagtcttcccaaagccctctattaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cagagaagaaactggatggtcatggggggatgatcagtcttcccaaagccctctattaga 269

                                                                       
Query: 181 tgatagccaagtttgtaactgacctagtgttaagggctgagatgcctctaccctttcatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tgatagccaagtttgtaactgacctagtgttaagggctgagatgcctctaccctttcatc 209

                   
Query: 241 atgctctt 248
           ||||||||
Sbjct: 208 atgctctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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