Query= MSMg01no438_l23.b1 MSMg01no438_l23.b1 CHROMAT_FILE:
MSMg01no438_l23.b1 PHD_FILE: MSMg01no438_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:38 2005
(439 letters)
>mm_chr8_105669761_105670598
Length = 838
Score = 797 bits (412), Expect = 0.0
Identities = 430/436 (98%), Gaps = 1/436 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagtgtgaaatataggaaccatccagtcctcagactaccttaaaaaaagggatt 63
|||||||||||| ||| ||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 638 ggaattcagtgtaaaacatacgaaccatccagtcctcagactaccttaaaaaaa-ggatt 580
Query: 64 cctcttaagatgccttttcatgtccaaagtcatacaacttaatacccttaatgtgtgtct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 cctcttaagatgccttttcatgtccaaagtcatacaacttaatacccttaatgtgtgtct 520
Query: 124 ttgtatgaaagacaatgtaagtcaactagtgagaacacctgtggtattctctaaagcttg 183
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ttgtatgaaaaacaatgtaagtcaactagtgagaacacctgtggtattctctaaagcttg 460
Query: 184 tgcagaggtgacgaattcgctaggctgggctctggaggaggactcatttcagtatagccc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tgcagaggtgacgaattcgctaggctgggctctggaggaggactcatttcagtatagccc 400
Query: 244 agggaaagtgtaaagccattcaattagaaaggaaaatactacaagagggccttggtagtc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 agggaaagtgtaaagccattcaattagaaaggaaaatactacaagagggccttggtagtc 340
Query: 304 tatttaggagccatgtaggaggtgaaaaatatccaacacagctgaggtacttttataaaa 363
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 339 tatttaggagccatgtaggaggtgaaaaataaccaacacagctgaggtacttttataaaa 280
Query: 364 tgctttgtctttttaaaaatcatgcacataaggaattatttattaatgtactctaggtat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tgctttgtctttttaaaaatcatgcacataaggaattatttattaatgtactctaggtat 220
Query: 424 gactcccttcttgttg 439
||||||||||||||||
Sbjct: 219 gactcccttcttgttg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 838
Length adjustment: 9
Effective length of query: 430
Effective length of database: 829
Effective search space: 356470
Effective search space used: 356470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no438_l23.g1 MSMg01no438_l23.g1 CHROMAT_FILE:
MSMg01no438_l23.g1 PHD_FILE: MSMg01no438_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:38 2005
(570 letters)
>mm_chr8_105505850_105506823
Length = 974
Score = 1021 bits (528), Expect = 0.0
Identities = 561/574 (97%), Gaps = 4/574 (0%)
Strand = Plus / Plus
Query: 1 tatgcccagaattggaacactctgtacagaggacttaccta----cttacttcaattcat 56
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 201 tatgcccagaattggaacactctgtacagaggatttacctagatacttacttcaattcat 260
Query: 57 tgtactaaccgaatcaataaaaataagctggtaatgacaacaggttcatggtataacttc 116
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtactaaccgagtcaataaaaataagctggtaatgacaacaggttcatggtataacttc 320
Query: 117 tagatttctcttcagagtctagctggtaccaatggtcaggtctatgataagtttattgaa 176
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 tagatttctcttcagagtctagctggtaccattggtcaggtctatgataagtttattgaa 380
Query: 177 gaaaggaaatggtactgaaactgggatctcaaacctcaaattctaagagactcggtaaat 236
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaggaaatggtactgaaactgggatgtcaaacctcaaattctaagagactcggtaaat 440
Query: 237 ctgtaaataaagatattgaaatctattctctttcaaggaccctccatatattagaatttg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtaaataaagatattgaaatctattctctttcaaggaccctccatatattagaatttg 500
Query: 297 tacatggccctgaatagggactggaaagccaaattctatggactaagtttagaagaagac 356
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 tacatggccctgaatagggactggaaagccaaattctatggactaagtttagtagaagac 560
Query: 357 agccacactctttcatgtacatattatccatgtttgcctttgtgctacaatggcaaggtt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 agccacactctttcatgtacatattatccatgtttgcctttgtgctacaatggcagggtt 620
Query: 417 gaatggattatgaagtagagtacttgcaaaacagcattgcctcattaccaccgagctctt 476
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 621 gaatggattatgaagtagagtacttgcaaaacagcattgccttattaccaccgagttctt 680
Query: 477 cacagcaaaagacaattctagcccacaggagatcaattgatttttctacatctaacaact 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacagcaaaagacaattctagcccacaggagatcaattgatttttctacatctaacaact 740
Query: 537 tcgttctttctcccattcttatcttcctttgatt 570
| ||||||||||||||||||||||||||||||||
Sbjct: 741 ttgttctttctcccattcttatcttcctttgatt 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 974
Length adjustment: 10
Effective length of query: 560
Effective length of database: 964
Effective search space: 539840
Effective search space used: 539840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
