Query= MSMg01no438_o19.b1 MSMg01no438_o19.b1 CHROMAT_FILE:
MSMg01no438_o19.b1 PHD_FILE: MSMg01no438_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:53 2005
(526 letters)
>mm_chr8_10961467_10962389
Length = 923
Score = 946 bits (489), Expect = 0.0
Identities = 513/523 (98%), Gaps = 5/523 (0%)
Strand = Plus / Minus
Query: 5 gaattcctttaaatatccaacatgagatttcctggtaggactcacaggggccctgcatag 64
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gaattcctttaaagagagaacatgagatttcctggtaggactcacaggggccctgcatag 664
Query: 65 ccagccaggattgagttaggaggagctgcatgctcaggattcaaagggcattcttgcgcc 124
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 663 ccagccaggattgagttaggaggagctgcgtgctcaggattcaaagggcattcttgcgcc 604
Query: 125 ttacctggtagttataacttggcttttccagtgggcgtgtactaagtggtgtatgacttc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ttacctggtagttataacttggcttttccagtgggcgtgtactaagtggtgtatgacttc 544
Query: 185 ttaagaaaaggtttagccttcagagtaaagttaattttctctggtagtaaaaacaaaatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ttaagaaaaggtttagccttcagagtaaagttaattttctctggtagtaaaaacaaaatg 484
Query: 245 tcagagtctctgagtattagcagctgtccactctgttgctgcttcttccttccggagccg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tcagagtctctgagtattagcagctgtccactctgttgctgcttcttccttccggagccg 424
Query: 305 ggtttctccgacgctcctgtcaactaggttgccggataacctagcagcagagccgtttct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 423 ggtttctccgacgctcctgtcaactaggttgccggataacctagcagcagagc--tttct 366
Query: 365 ctgggtccgtctctcaggtggcctcatccaagagaggcccctaggtgaggagatgcagga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ctgggtccgtctctcaggtggcctcatccaagagaggcccctaggtgaggagatgcagga 306
Query: 425 ctgggtctctatgtggccagcttcggtgtctgcgtgccttcaaccatatccacagggaga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctgggtctctatgtggccagcttcggtgtctgcgtgccttcaaccatatccacagggaga 246
Query: 485 gagcagccctatctctagcaccttgcccctgc---cctggctg 524
|||||||||||||||||||||||||||||||| ||||||||
Sbjct: 245 gagcagccctatctctagcaccttgcccctgcctgcctggctg 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 923
Length adjustment: 10
Effective length of query: 516
Effective length of database: 913
Effective search space: 471108
Effective search space used: 471108
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no438_o19.g1 MSMg01no438_o19.g1 CHROMAT_FILE:
MSMg01no438_o19.g1 PHD_FILE: MSMg01no438_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:53 2005
(468 letters)
>mm_chr8_10775623_10776490
Length = 868
Score = 897 bits (464), Expect = 0.0
Identities = 467/468 (99%)
Strand = Plus / Plus
Query: 1 cccttttctgggaagaaagaaagaagggggtggggaagagtggacgagaagcaccaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccttttctgggaagaaagaaagaagggggtggggaagagtggacgagaagcaccaaaaa 260
Query: 61 gaactatgcacacacaaacaatactcagctgtgaatcctagggaaagcctttggcagggc 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagtatgcacacacaaacaatactcagctgtgaatcctagggaaagcctttggcagggc 320
Query: 121 tggggatttttcctgttactttgcaaagctacatagtgagaagatgtcagtggcccagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggggatttttcctgttactttgcaaagctacatagtgagaagatgtcagtggcccagct 380
Query: 181 ctcaatagagtcaggccctttgcatggtaaggttgtgaatgataggtgtgcttcctttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcaatagagtcaggccctttgcatggtaaggttgtgaatgataggtgtgcttcctttca 440
Query: 241 tcctttggtgctgagacagatcactttcatgggcagagctccacgccctgctcatagcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctttggtgctgagacagatcactttcatgggcagagctccacgccctgctcatagcac 500
Query: 301 ttaaggaatacatggtgggggcatcttattcctgtctttcactttccatttagtctatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaaggaatacatggtgggggcatcttattcctgtctttcactttccatttagtctatgt 560
Query: 361 ccattttgtaaaaagcagctgccaggatatagtgccctcgatgaatgaaatacacaccat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccattttgtaaaaagcagctgccaggatatagtgccctcgatgaatgaaatacacaccat 620
Query: 421 ttaagatactgtctgtgtgtgatgattgcctgccaagttcatttcatc 468
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaagatactgtctgtgtgtgatgattgcctgccaagttcatttcatc 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
