BAC Information

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BAC

Clone NameMSMg01-439A16
Chromosome8 (Build37)
Map Location 51,224,097 - 51,224,571
singlet/doubletsinglet
Overlap genenone
Upstream gene4930555F03Rik, LOC100039919, EG667495
Downstream geneLOC100039954, LOC100039966
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439A16.T7 (MSMg01no439_a16.b1)MSMg01-439A16.TJ (MSMg01no439_a16.g1)
ACCAG529493AG529494
length742764
length of high quality
(start - end)
479 (43 - 521)245 (72 - 316)
definitionCHROMAT_FILE: MSMg01no439_a16.b1 PHD_FILE: MSMg01no439_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:02 2005CHROMAT_FILE: MSMg01no439_a16.g1 PHD_FILE: MSMg01no439_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTGACAGCTTGCTTGTAAAAAGCTTAGAATTTCAATGATAAGCATGAG
TGAAACTTGGTGTTATCATCCTTGGTCTTAATCCTAGTGACTGAGATACA
AAAAGATTGATAATCTCAGGAATGATAAAACTAGTGATTGAGATTGCAGA
ATGTGGACTGAGGTATGTTAGAAGGTCACAACTTTCCCCTCTACTTCCAA
AGTTCTGAAAAGACAAGATGTCTGGAGAATAAGTTAAGAAGCAATGATCA
ATGATGTCAATCAATCATGACGTTTAGTGTTTCGACATAATAGAAGGGAC
ACAAAAAAATCCTAAATGAAAGGGTTCATGAATCATTTCAATTGGTGCAT
ACATTGATGAGATAAAATGACATGACAGAAGTGACCTGGGAGCTTTGCAC
CATTTCTCATGATTTGTCTTGTGTGCATTTTCAGTAAGCTCTTCATTAAC
ATCCTTTATAAGAAGCTGGCCAATGCAAATAAAGTATTTTCTTATATTCA
ATAAACCACTGTTGCCAAATATTAAAACTAAAATTGTGGGCTACACAGGA
ATTCTGTACTTTCCACTGTAGGCTAACATTGTACGCACGGTACTCTTTCT
CTAACTGTGGCCTCCAGCTATTACCTTTGATTAATTGACTGGACGCTCTG
CCACCATGTATTTCTTCTTTTCCCCTTCTACATCACCGCCTA
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCCTACACTGGGGTATTAAACCCCATCAG
GCCAAAAAGTCGCTCCTCCCACGAGGTCCAACAAGGCCATCCTCTGCGAC
ATATGCAGTAGAAGACATGGGTCCCTCCATGTGTATTCTTTGGTTGGTGG
TCCAGTCCTGGGGAGATCCGGGGGTTCTGGCCTGTTGACACTTGTGCTCC
CCCCCCCCATGGAGCTGCAAACCCCCTCAGCTCCTTCAGCTCCTTCAGTC
CTTCTCCAACTTTTCTATTTTGGACCCTGCGCTCAGTCCAATGGTTGGCT
GCGAGCATCTGCCTCTGTATTTGTCAGGCTCTGGCAGAGGCTCTCAGGAG
ACAACTATACCAGGCCCCTGTCCACAAACACTTCTTGGCATCCACAATAG
TGTCTGGCCTTGGCGACTGCATCTGACACGCACCCCCCAGTTTGGCTTAT
TCCCCATATGTTCTTTCCTTTAGTCTCTTTCTCCACTCCTTGCCCTCCCT
TTTTCCCTCCTTTCGACTTTTTTGCTCTCCTTTTCTTTTCAGTTTTTGAT
CTATCTCTCCTTTTCTCCCCTCTTTTTTCTGCTTCCCCCTACTTTACTCT
CCCTTTTTTTCCCCCCCCCGGATACACACCCCAATTTCCTTTTCCTTCTT
CTTTTTCCCTCACTTTTTCTTTCCTCCCTCTTTCCATCCGACTTTTCCCT
ATTTCTTACTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_a16.b1 MSMg01no439_a16.b1 CHROMAT_FILE:
MSMg01no439_a16.b1 PHD_FILE: MSMg01no439_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:02 2005
         (479 letters)



>mm_chr8_51223893_51224771
          Length = 879

 Score =  888 bits (459), Expect = 0.0
 Identities = 471/475 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgacagcttgcttgtaaaaagcttagaatttcaatgataagcatgagtgaaac 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgacagcatgtttgtaaaaagcttagaatttcaatgataagcatgagtgaaac 264

                                                                       
Query: 65  ttggtgttatcatccttggtcttaatcctagtgactgagatacaaaaagattgataatct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttggtgttatcatccttggtcttaatcctagtgactgagatacaaaaagattgataatct 324

                                                                       
Query: 125 caggaatgataaaactagtgattgagattgcagaatgtggactgaggtatgttagaaggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caggaatgataaaactagtgattgagattgcagaatgtggactgaggtatgttagaaggt 384

                                                                       
Query: 185 cacaactttcccctctacttccaaagttctgaaaagacaagatgtctggagaataagtta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacaactttcccctctacttccaaagttctgaaaagacaagatgtctggagaataagtta 444

                                                                       
Query: 245 agaagcaatgatcaatgatgtcaatcaatcatgacgtttagtgtttcgacataatagaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agaagcaatgatcaatgatgtcaatcaatcatgacgtttagtgtttcgacataatagaag 504

                                                                       
Query: 305 ggacacaaaaaaatcctaaatgaaagggttcatgaatcatttcaattggtgcatacattg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggacacaaaaaaatcctaaatgaaagggttcatgaatcatttcaattggtgcatacattg 564

                                                                       
Query: 365 atgagataaaatgacatgacagaagtgacctgggagctttgcaccatttctcatgatttg 424
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgagataaaatgatatgacagaagtgacctgggagctttgcaccatttctcatgatttg 624

                                                                  
Query: 425 tcttgtgtgcattttcagtaagctcttcattaacatcctttataagaagctggcc 479
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcttgtgtgcattttcattaagctcttcattaacatcctttataagaagctggcc 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)