BAC Information

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BAC

Clone NameMSMg01-439L07
Chromosome8 (Build37)
Map Location 32,857,608 - 32,857,852
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329, EG330731
Downstream geneLOC100041340, Nrg1, 2010007E15Rik, EG666589, EG546052
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439L07.T7 (MSMg01no439_l07.b1)MSMg01-439L07.TJ (MSMg01no439_l07.g1)
ACCAG529996AG529997
length748754
length of high quality
(start - end)
159 (71 - 229)247 (74 - 320)
definitionCHROMAT_FILE: MSMg01no439_l07.b1 PHD_FILE: MSMg01no439_l07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:54 2005CHROMAT_FILE: MSMg01no439_l07.g1 PHD_FILE: MSMg01no439_l07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTCATATTTGCGGCGCTATACGACTCCTATAGTCAGAATACCGCGGAAT
TCTTTGTTCTTTCATGAGAACCATTTTTTAATGGGGTTATTTGATTTTCT
GAAGTCCACCTTCTTGAGCTCTTTATATATGTTGGATATTAGTCCCCTAT
CTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGACTTTTT
GTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAT
GTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGT
TCAGGAATTTTTCCTCCGTGCTTTATCTTCAAGGCTTTTCCCCACTTTCT
CCTCTATAAGTTTCAGTGTCTCTGCTTTTATGTGAAGTTCCTTGATCCAC
TTAGATTTGATCTTACCACACCGAGATAAGTATGGATCGATTCGCATTCT
TCTACACGAGAACAACCAGTTGTGCCAGGACCAATTGTTGACAATGCTGC
CTTTCTTCCCCTGGATAGGTTTAGCTTCCTTGTCGAAGATCAAGTGACCA
TAGGTGCGGGGGGTACTTTTCTGTCGCTTCTACTCTCCTCCCATTTGGTT
TACCTGTCTGTTCCCCCCTCCATTACCCTGCTCTCTCCAAATCCCATCTG
TCCTTTTATTATAACTCCCACTCCTCGCTCTTGGCGATCCTTATCTAAAA
CTTCTCTCTTCCATTCCGCCCCTCTTTTTCCTTTATTTACCCCTTTTG
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACCTGCCTCTGCCTCCCAAGTGCTGGG
ATTAAAGGCCTGCGCCACCACGCTTGATGCTCCCCCTCTTGTTTACTGTG
AGTGACAAACATCATATTGATAAGCTAAATTGTCATGAATGGTTTAAACT
CACTCAAAAGTTGCCTCTGGCATCTGGGTTGTTTCTCCCTCATGTCTAAA
TGAACATGCTTGTCTCTAAGAATCCTCCAAGACCCTTTGTTCCAGGGAAG
GGCTATTCACTCTCAAACTCTTAACAGAGAGAGAATAGAACAGCAAAACA
GTCCATAGTAAAGAGAACAAAGGTCAGCCATTTCCAACAGAGGTTGCTAT
TATCTGCTTCATGGCACAAAAGTGTTTCCTGTCACACTAAGAGCTGTGAC
TTTGGCCTTAAGAATGTCACCCCATTTATCCCGCTTATTTCCCACTTTCC
TCTTTCTCTATTCCATCACTGCTCCTGTCCATTTTGATGATGTTATACCT
TCTATTTTTTTCCTATCTATCTTATTTTTTTTTAATTTTTCTCCATTTCT
ATTAACCCTCCCTTATCTTTATTTTTCTCTTTCCCTTTTTTCTTTCTTTA
CTTTTATCCCTTAACTCCCCCCCCATTTTTTCCTCCCTCTTTTCTTCTCC
CCTCCCATTTTTTGTTTCCCTCCCACTTATTTTTTCCAAACAGCATCCCT
CCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_l07.g1 MSMg01no439_l07.g1 CHROMAT_FILE:
MSMg01no439_l07.g1 PHD_FILE: MSMg01no439_l07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:54 2005
         (247 letters)



>mm_chr8_32857355_32858001
          Length = 647

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctgcctctgcctcccaagtgctgggattaaaggcctgcgccaccacgcttgatgctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 acctgcctctgcctcccaagtgctgggattaaaggcctgcgccaccacgcttgatgctcc 439

                                                                       
Query: 61  ccctcttgtttactgtgagtgacaaacatcatattgataagctaaattgtcatgaatggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ccctcttgtttactgtgagtgacaaacatcatattgataagctaaattgtcatgaatggt 379

                                                                       
Query: 121 ttaaactcactcaaaagttgcctctggcatctgggttgtttctccctcatgtctaaatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 378 ttaaactcactcaaaagttgcctctggcatctgggttgtttctccctcatgtcaaaatga 319

                                                                       
Query: 181 acatgcttgtctctaagaatcctccaagaccctttgttccagggaagggctattcactct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 acatgcttgtctctaagaatcctccaagaccctttgttccagggaagggctattcactct 259

                
Query: 241 caaac 245
           |||||
Sbjct: 258 caaac 254


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)