BAC Information

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BAC

Clone NameMSMg01-439N13
Chromosome8 (Build37)
Map Location 41,296,144 - 41,296,455
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC632066, EG621335, LOC434304, Msr1, EG621431, LOC100039072, LOC666959, EG632166
Downstream geneFgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl, Mtus1, Fgl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439N13.T7 (MSMg01no439_n13.b1)MSMg01-439N13.TJ (MSMg01no439_n13.g1)
ACCAG530102AG530103
length752726
length of high quality
(start - end)
473 (43 - 515)313 (176 - 488)
definitionCHROMAT_FILE: MSMg01no439_n13.b1 PHD_FILE: MSMg01no439_n13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:05 2005CHROMAT_FILE: MSMg01no439_n13.g1 PHD_FILE: MSMg01no439_n13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGA
ATTCTTTGTTCTGCTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCTTGTTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
GGTCCCATTTGTCAATTTTCGATCTTACAGCACATGCCATTGCTGTTCTG
TTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTT
CTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCC
ACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATT
CTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCT
GTCTTTCTTCAACTGGATGGCTTTAGCTCCCTTGTCGAATATCAAGTGAC
CATAGGCGTGTGGGCTCATTTCTGGGGCTTTCCTTCTATTTCCTTGGTTT
ACCTGTCCGTTTTTCATCCACTAACCCGCCGTTTTTTATCCTCAATTTCC
TTGTCTTAAACCCTTTGTTCAGGTAGGGCTTCTCCCCCCCAAAGCTCCTT
TTCTTTTCGCAAAAAGTTTTTTCTCCCCTCCTTTTCCTTGTTTCTGCCAA
CG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCAGTGGAGGTGCTAAGGACACCAACCCA
CCCACAAAACTTTCAACCCAAAATTTGTCCTGCCTACAAGAAATGGCAGG
GACAAAGATGCCTCAGAAATGGAGGGCATTTTGAAATTCTTAATTCACTC
TCTTAAGATTGTAAAACAAAAATAAATAAAAATATGCCTTGAGACATTTT
CTGTATATCACACCCATACAATTTTCCAAACTTAGAAGGTAAAACACCTT
TGTCAGTCTATCATTATTTAGGGTTTTCTTTTTTTAGACTATACCTCCAT
CTTCAAAGAGGCTTGCGGCTAAGACTTGGAAAGCACACTCCATAGGCAGA
TGGTGTGGGTGGGTGCCTGTAAACACCATTCTCTGCTCTCCTTTGAAACT
ATACTTGTCAAAGTTATTACCCAGGAAATCCCCGTGGATGAGTAACACAC
TGCATACGTACTGAACACACTGCAAAAATCCTAGAAGTAACAAGAGAGGA
AAATAGTCAATGTCTTCTTCCACATTTCTGAGAAATGCAACTAAACACCT
TCGCTAATCATCTACCCACTGGTGAACAGCATATGATTGACTGCCTGCTT
AACATAATGATATTCCCTACCATCTACCAGCTCATATGCCCTCATTCTTC
ATCGCCACTTGTTTAATGCCAACACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_n13.g1 MSMg01no439_n13.g1 CHROMAT_FILE:
MSMg01no439_n13.g1 PHD_FILE: MSMg01no439_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:05 2005
         (313 letters)



>mm_chr8_41295944_41296655
          Length = 712

 Score =  567 bits (293), Expect = e-166
 Identities = 308/315 (97%), Gaps = 5/315 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcattttgaaattcttaattcactctcttaagattgtaaaacaaaaataaataaaaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcattttgaaattcttaattcactctcttaagattgtaaaacaaaaataaataaaaatat 260

                                                                       
Query: 61  gccttgagacattttctgtatatcacacccatacaattttccaaacttagaaggtaaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccttgagacattttctgtatatcacacccatacaattttccaaacttagaaggtaaaac 320

                                                                       
Query: 121 acctttgtcagtctatcattattt--agggttttctttttttagactatacctccatctt 178
           ||||||||||||||||||  |     ||||||||||||||||||||||||||||||||||
Sbjct: 321 acctttgtcagtctatcagaa---caagggttttctttttttagactatacctccatctt 377

                                                                       
Query: 179 caaagaggcttgcggctaagacttggaaagcacactccataggcagatggtgtgggtggg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 caaagaggcttgcggctaagacttggaaagcacactccataggcagatggtgtgggtggg 437

                                                                       
Query: 239 tgcctgtaaacaccattctctgctctcctttgaaactatacttgtcaaagttattaccca 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgcctgtaaacaccattctctgctctcctttgaaactatacttgtcaaagttattaccca 497

                          
Query: 299 ggaaatccccgtgga 313
           |||||||||||||||
Sbjct: 498 ggaaatccccgtgga 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 712
Length adjustment: 9
Effective length of query: 304
Effective length of database: 703
Effective search space:   213712
Effective search space used:   213712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)