BAC Information

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BAC

Clone NameMSMg01-440H09
Chromosome8 (Build37)
Map Location 48,285,924 - 48,286,445
singlet/doubletsinglet
Overlap geneStox2
Upstream geneSlc25a4, LOC621269, LOC100039875, LOC667325, Helt, LOC667337, Acsl1, Mlf1ip, Ccdc111, Casp3, Irf2, Enpp6
Downstream gene4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2, LOC100040113, Dctd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440H09.T7 (MSMg01no440_h09.b1)MSMg01-440H09.TJ (MSMg01no440_h09.g1)
ACCAG530572AG530573
length7721,591
length of high quality
(start - end)		524 (52 - 575)---
definitionCHROMAT_FILE: MSMg01no440_h09.b1 PHD_FILE: MSMg01no440_h09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:55 2005CHROMAT_FILE: MSMg01no440_h09.g1 PHD_FILE: MSMg01no440_h09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCCTGCTTCCACATCAAACAATCTAGTTGCTTTTAAAGT
CTTCACGTTGTTAGTAACACAGCTTCACAGGAAGCCACGTGCCTTTCTCA
GAAGCTGTTCCATGATTCCCGTTACTAAGAAACAGACAAGGACGCAGAGC
TGGTATGTGATGGTCAAATACTCATCCCTGCTGAGCAAAAATTGTCCCAC
CAAGTTACAGTACATCCTAGAGAAAGGAATGGTGGTGCTTAAAATAGTAC
TTGCTTTGCCAGCTTCTGTGGTAAAGATGCACCCATCCAACCTTCCCATC
TGTGGAACACACTCATGCCTGTTGGGCACACCTAAACATTTGCAAGGACA
CCGAGTAGATTTTACCAAGTACAGCCTACATACAGGCCTTGAAAGACTGC
ACCACCTGTCCTTGTGAATAAAGTTTTATTGGAACACAGTTGTCTCCGTA
TTATCCTTGGCTCCTTGTACATAGCAGTAGAGCAGAGACATTGCCAACAG
AGGTCACATGACTCACAAAGCATACAAGATTTACCAATTGGTTCTTCATA
GATAAACATCAACAAACCCAGGTCCAGGACACAGNAATAATTATTTTAAT
TTTTCTTTATAATAGCTCTTTTTTTCCCTCCAGATTTGGTTAAAAATTTT
TGTTTTTTGAGACCAGTCCCCCTTGTGAAGGCCATGGCGGGCCCTCGAAA
GGTCCTTATCATCCGCCCCCCC

CTTATCATATATTTGTCCGTACGCGGGGTTNNTCCTGGTTGCGTGTCTCG
TCTGCGGTGTCTCTCTCCACTATATATACGTATAGCACCTCATAATCCAG
TACAGAGAGTCTTCCCCGCAGAAAGAGCGCCCGATGCGCACACTGCGCGG
CAGCACCACCACTGCGACGATCACCGCCAGNCTCTACCGCGCGGGCGTAT
CGAGACGCCTTATCGACGCTGTGTACCCGATAGCATCTCGTCTCATTATC
ACTATGCGAGACTGTCGTAACGAGGAGATCATGCGACGGCATGCGAAGGT
CGGAGAGAGGTTCTATCAGCACTGAGTGGATCGTTACTTTGATGCGCGAG
ATTACTGCGTCTGGGCATGACCACACTACCAGGNTTATACGTGGTAGGAT
GCGTGAGCCGTGGCAGCGGGAGTGACGGGGATTGTTGCTCGCGACGGTGG
TGAATCGCGAAGTGGNGATGCGAGAGCAGCTCGAGTAATAATGAGTGGTG
ATAAGATGGCATGTCGGATGCAGCGAGTACAGTAGCGCCAGGTATCACAA
TTGACAGCTCTGTATGTGAGCGTCAGCGGCTCTTAATGGCGACAGCAATG
CCCACTACACTAAGACATCCCGAACGACTGCGATTCGACGAGTGNAGGCA
GTGATGTAAGGCACATCAAACGCAGCCAAGACTCATCACGACCTATCACG
TCATTGATATCGGATCATAGTACACCGTAAATGTAGGCAAAGCCGGCGCT
GGCGTGCTTGGCGANCATGACCCTACACATATGATATCATCTGTCACATA
CCTACTGACATCACACCCACACACTACATACATGGTCTGCGATCGTGAAT
CGATGTCTTCGTCTTGAGTACCGCAGTGACTCATGCGCTCGGTCGCATGC
AGATGAGACGAGTGCGTACGCCGGAGTGTGGAGATGCTNGTGCAGGACTC
GTGAGCGACGAACGGAGAACGAGAAGAAGCGACGCGCTCACGTCGCATGA
TGTGCCGAGTGCTGCCAGCACTTAGCACAGTTGACTGTATACATGACTAC
AGGATCGCAGCGATGAGCGTTGAGAGATCGAGTGCATCGGTAGACNAGCT
CGCGCACGAGAGAATCACATCGCGCATCATCTATAGTGACGATGGTAGTA
GGAGACGAAGAGCTGAGGCGCGCGANCGGAGTGCGGAGACAGACGATGCG
AGCGAGCTCGATCACGCTGAATGCTGTGTGCGAACTGGCTAGAATATGCT
CTAGACATCTTATATCGATGATGANCGCACTGGTTGCATCGTGTGAGATG
AGTCGTCGCGCGAACGCACGAATNTACAGATGTAGCAGTAGCGTGCGCTA
GCACGGCGATAGACACGTCTACTGATCACTATAGTCACTAACTGNNGATA
TCGGACANANATCACACTTCTAATGCGATAGAGAGATGNTGTGAGAGCAC
GCGTCTCCACGATGCAGAAGAGATACGAGGTAGCACAGTAACTCACGATA
CGTTATATAGTCGCCGTCTGTGAGCACGTCTGCAGCCGNTCATCATGCGT
ACGTGCCAGGTGTATGATNGTANTGANACATGACGCGCGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_h09.b1 MSMg01no440_h09.b1 CHROMAT_FILE:
MSMg01no440_h09.b1 PHD_FILE: MSMg01no440_h09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:55 2005
         (524 letters)



>mm_chr8_48285847_48286771
          Length = 925

 Score =  978 bits (506), Expect = 0.0
 Identities = 518/522 (99%), Gaps = 1/522 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcctgcttc-cacatcaaacaatctagttgcttttaaagtcttcacgttgtta 62
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ggaattctcctgcttcagacatcaaacaatctagttgcttttaaagtcttcacgttgtta 540

                                                                       
Query: 63  gtaacacagcttcacaggaagccacgtgcctttctcagaagctgttccatgattcccgtt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gtaacacagcttcacaggaagccacgtgcctttctcagaagctgttccatgattcccgtt 480

                                                                       
Query: 123 actaagaaacagacaaggacgcagagctggtatgtgatggtcaaatactcatccctgctg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 actaagaaacagacaaggacgcagagctggtatgtgatggtcaaatactcatccctgctg 420

                                                                       
Query: 183 agcaaaaattgtcccaccaagttacagtacatcctagagaaaggaatggtggtgcttaaa 242
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 agcacaaattgtcccaccaagttacagtacatcctagagaaaggaatggtggtgcttaaa 360

                                                                       
Query: 243 atagtacttgctttgccagcttctgtggtaaagatgcacccatccaaccttcccatctgt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 atagtacttgctttgccagcttctgtggtaaagatgcacccatccaaccttcccatctgt 300

                                                                       
Query: 303 ggaacacactcatgcctgttgggcacacctaaacatttgcaaggacaccgagtagatttt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ggaacacactcatgcctgttgggcacacctaaacatttgcaaggacaccgagtagatttt 240

                                                                       
Query: 363 accaagtacagcctacatacaggccttgaaagactgcaccacctgtccttgtgaataaag 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 accaagtacagcctacatacaggccttgaaagactgcaccacctgtccttgtgaataaag 180

                                                                       
Query: 423 ttttattggaacacagttgtctccgtattatccttggctccttgtacatagcagtagagc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 ttttattggaacacagttgtctccgtattatccttggctccttgtacatagcagtagagc 120

                                                     
Query: 483 agagacattgccaacagaggtcacatgactcacaaagcatac 524
           |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 119 agagacgttgccaacagaggtcacatgactcacaaagcatac 78


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 925
Length adjustment: 10
Effective length of query: 514
Effective length of database: 915
Effective search space:   470310
Effective search space used:   470310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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