Query= MSMg01no440_o18.b1 MSMg01no440_o18.b1 CHROMAT_FILE:
MSMg01no440_o18.b1 PHD_FILE: MSMg01no440_o18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:32 2005
(543 letters)
>mm_chr8_99376447_99377388
Length = 942
Score = 895 bits (463), Expect = 0.0
Identities = 520/541 (96%), Gaps = 7/541 (1%)
Strand = Plus / Plus
Query: 5 gaattcaactttgtcacgagcaattgtttcaagctccaatttaaaataatggctatttga 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaactttgtcaggagcaattgtttcaagctccaatttaaaataatggctatttga 264
Query: 65 aacaaaatgaaatgaggactgcttaatcctcctcaagtacttggttaatcactttaagca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacaaaatgaaatgaggactgcttaatcctcctcaagtacttggttaatcactttaagca 324
Query: 125 atgtaacttgatctccatgaaaatataaagtagattcagtgctgtgtgaagatactactc 184
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgtaacttaatctccatgaaaatataaagtagattcagtgctgtgtgaagatactactc 384
Query: 185 agaaaggtcatga-ccctaaccaagcggtggatgatatgatccagcagtaaagcacttgc 243
||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 385 agaaaggtcatgaaccctaaccaagcggtggat---atgatccagcagtaaatcacttgc 441
Query: 244 ttaggatttatgaatttctgtgttcaatcactggaactcctta-aaaaatgattaggaag 302
||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 442 ttaggatttgtgaatttctgtgttcaatcaccagaactccttttaaaaatgattaggaag 501
Query: 303 aatactaaaaatattaattgataataaatgttaacagaacttagctggtactaacacagg 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aatactaaaaatattaattgataataaatgttaacagaacttagctggtactaacacagc 561
Query: 363 tatactgatgtcagaatcaggatttaaatgtaggtcttatttgtacatttcatctggttg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tatactgatgtcagaatcaggatttaaatgtaggtcttatttgtacatttcatctggttg 621
Query: 423 agctttttgagctctgtggactgtatcttgggtattctgtacgtctttatcttttggcta 482
|||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 622 agcttttttagctctgtggactgtatc--gggtattctgtatgtctttatcttttggcta 679
Query: 483 aaatccacttatcaatgagtacatatcaggcctgtccttttgggtctgagtttcctctct 542
| |||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 680 atatccacttattagtgagtacatatcaggcatgtccttttgggtctgagtttcctctct 739
Query: 543 c 543
|
Sbjct: 740 c 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 942
Length adjustment: 10
Effective length of query: 533
Effective length of database: 932
Effective search space: 496756
Effective search space used: 496756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no440_o18.g1 MSMg01no440_o18.g1 CHROMAT_FILE:
MSMg01no440_o18.g1 PHD_FILE: MSMg01no440_o18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:32 2005
(482 letters)
>mm_chr8_99524620_99525501
Length = 882
Score = 895 bits (463), Expect = 0.0
Identities = 478/483 (98%), Gaps = 2/483 (0%)
Strand = Plus / Minus
Query: 1 aatatttctgtagacttttgtctcattttgcttttgggggggcattttcatcttctcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aatatttctgtagacttttgtctcattttgcttttgggggggcattttcatcttctcctt 623
Query: 61 ctgctttattttatttccctttttgtgggattttttttgagagtagtggggtttctttgt 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 622 ctgctttattttatttccctttttgtggga-tttttttgagagtagtggggtttctttgt 564
Query: 121 tttagtttttaataaaactatatagagaaaaagaacatataattgggcaggcagggaagt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 563 tttagtttttaataaaactatatagagaaaaagaacatataattgggcaggcggggaagt 504
Query: 181 ggagacgatctgggaggaactgggtgatggggaaagcatcaaatattttacagg-ttttt 239
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 503 ggagaagatctgggaggaactgggtgatggggaaagcatcaaatattttacaggtttttt 444
Query: 240 ttcaattaaaatgaaaagtagaagaaagacagtaaagcatagtatataactaatggtaac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttcaattaaaatgaaaagtagaagaaagacagtaaagcatagtatataactaatggtaac 384
Query: 300 atgagcacatagcataattaggatcctgggttggaccccagcaccacagtgttttaagac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atgagcacatagcataattaggatcctgggttggaccccagcaccacagtgttttaagac 324
Query: 360 aggaaaatctactgacttgcttcccgcccaccataccaaggactataggtgcaattgggg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aggaaaatctactgacttgcttcccgcccaccataccaaggactataggtgcaattgggg 264
Query: 420 atacagaattccatctttccttaacctctagagcagttgaggattatagtgtctcccaga 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 263 atacagaattccatctttccttaacctctagagcagttgaggattatagtgtcttccaga 204
Query: 480 aag 482
|||
Sbjct: 203 aag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
