Query= MSMg01no441_b11.b1 MSMg01no441_b11.b1 CHROMAT_FILE:
MSMg01no441_b11.b1 PHD_FILE: MSMg01no441_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:45 2005
(468 letters)
>mm_chr8_16033141_16034007
Length = 867
Score = 843 bits (436), Expect = 0.0
Identities = 460/468 (98%), Gaps = 1/468 (0%)
Strand = Plus / Plus
Query: 1 agctacttgcatgcctgtgacttccccctgtgtgaatgtgctctctaatagtgtgtgctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctacttgcatgcctgtgacttccccctgtgtgaatgtgctctctaatagtgtgtgctt 260
Query: 61 ctgagagggacaatgggtgctttgagtgggccatggaaggacatacgttaaagcaagctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgagagggacaatgggtgctttgagtgggccatggaaggacatacgttaaagcaagctg 320
Query: 121 gctggatgagggccactcagcaagactgtgcaggtgtacttaccaatgcacaaaggggaa 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctggatgagggccacttagcaagactgtgcaggtgtacttaccaatgcacaaaggggaa 380
Query: 181 gggtagttccagcgacgtacggttcctggcatacaagaaatgtgtgagcggccctgttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggtagttccagcgacgtacggttcctggcatacaagaaatgtgtgagcggccctgttga 440
Query: 241 aaggcaaaccattaagcttgtttgttatttcagcagagcgtttaggaatgaaatgtatag 300
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggcaaaccaggaagcttgtttgttatttcagcagagcgtttaggaatgaaatgtatag 500
Query: 301 gaatgtacttaccttctttgtctctgaaaactgtgaatctaactcttacaaatgagtctc 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 gaatgtacttaccttctttgtctctgaaaactgtgaatctaactcttataaatgagtctc 560
Query: 361 atttggaaaaaatcaattaacaccaacaaggtccttttcactaacaaaatcttgggcacc 420
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 atttggaaaaa-tcaattaacaccaacaaggtccttttcactaacaaaatcttgggtaca 619
Query: 421 taaagaggcagcattctggctaatttttcaccatgcccaaggaaggca 468
|||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 taaagaagcagcattctggctaatttttcaccatgcccaaggaaggca 667
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 867
Length adjustment: 10
Effective length of query: 458
Effective length of database: 857
Effective search space: 392506
Effective search space used: 392506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_b11.g1 MSMg01no441_b11.g1 CHROMAT_FILE:
MSMg01no441_b11.g1 PHD_FILE: MSMg01no441_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:45 2005
(503 letters)
>mm_chr8_16205787_16206686
Length = 900
Score = 874 bits (452), Expect = 0.0
Identities = 490/504 (97%), Gaps = 5/504 (0%)
Strand = Plus / Minus
Query: 1 attgtgctgatgtatgcctgtcccataacagatgaaaattaactctgtacatcttctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 700 attgtgctgatgtatgcctgtcccataacagatgaaaattaactctgtaca---tctcca 644
Query: 61 atcaggacctcaggcctccgtttccccctactctt-tcctgcaccctctgcttccatctc 119
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 643 atcaggacctcaggcctccgtttccccctact-ttctcctgcaccctctgcttccatctc 585
Query: 120 cactgtgctgtccacatggtaaatgcctaggtgccattttctgtttgttcacacccacag 179
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 584 cactgtgctgtccacatggtaaatgcctaggtgccgttttctgtttgttcacacccacag 525
Query: 180 tactgcctatccaccaatgtgctgtcctctttcttggtcagtgtttcccacaggaaactg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tactgcctatccaccaatgtgctgtcctctttcttggtcagtgtttcccacaggaaactg 465
Query: 240 attttttcactgcattccaactccaggcctttgcatgcgtactcaatagcatcgcacttc 299
| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 464 acgtgcccactgcattccaactccagccctttgcatgcgtactcaatagcatcgcacttc 405
Query: 300 agagttccaatgctgctcgctcacacatctgaatccccttcctgtgtcatccttaggctt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 agagttccaatgctgctcgctcacacatctgaatccccttcctgtgtcatccttaggctt 345
Query: 360 ccagtttgcaattcagtcctgtgagaagaaagttagaatggctctatggtccatatttgt 419
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ccagtttgcaatccagtcctgtgagaagaaagttagaatggctctatggtccatatttgt 285
Query: 420 ctgcccctctctccagctgcccatcacatctggtcatctgcctgctatttccccctgtac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ctgcccctctctccagctgcccatcacatctggtcatctgcctgctatttccccctgtac 225
Query: 480 cttacagggcagccttggaacctg 503
|||||||| |||||||||||||||
Sbjct: 224 cttacaggacagccttggaacctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 900
Length adjustment: 10
Effective length of query: 493
Effective length of database: 890
Effective search space: 438770
Effective search space used: 438770
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
