BAC Information

Click to search

BAC

Clone NameMSMg01-441I15
Chromosome8 (Build37)
Map Location 76,944,464 - 76,944,755
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666134, Crry-ps, LOC666146
Downstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441I15.T7 (MSMg01no441_i15.b1)MSMg01-441I15.TJ (MSMg01no441_i15.g1)
ACCAG531397AG531398
length749751
length of high quality
(start - end)
35 (141 - 175)292 (323 - 614)
definitionCHROMAT_FILE: MSMg01no441_i15.b1 PHD_FILE: MSMg01no441_i15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:21 2005CHROMAT_FILE: MSMg01no441_i15.g1 PHD_FILE: MSMg01no441_i15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCTTXXXXXXXXXXXXXXXXXXXXXXXXTTTTCCAAAGAGGATCCGCG
GAATTCTTGCTTTCCAGATACTAACTCAGGACATGCCGTGTCTTCTAGAA
CTCCTCTCCGCAGAAGTTCACATCCTTATCTAAGTACGTGCCTATCATAG
GAACATCCTGTATCCAATGACCAGGAGACATAGATATAGAGAGGTTTGGA
GACCTTGCCTTATATTAGAACTACTCTGAAAGACCATCTGAGCACCATTA
TTCCCTGAGAGAAGAGCTGAAGCCAATGGTGTCAAGACTGAATTACAACT
GAGCATCTTCTGAGTTTCTCTACTTCTCTGGTCCCCTACAGTTGATGGCG
AGAAAACCTTTCAATGCTTCCTACATGTGCATGGTTATCTTATGACTGTT
TCATAAGATATTTACCTGCAGACGCTTTCATATTACATACATTTTATCAT
GTTCCCATTATATAAGACTTATTGATATTATACCTACTTTCATACAAGAT
TCAAAGCAGCTAATGTCTCTTCAATATAAACTGTTGGAGAATATAAGGAA
AGATATAGTCCAAACACCTACTTATGGTTTTAATTGTTAACACTTCGAGC
CTATTTTAATTTAACTCCCCCGCATTTTATTTGACCCTTTTTGGTTGTTT
GTGTAACACCATCCTCCCGCACTTGTAGGCTCTCCTTGTTCTAGCCACCC
TGCGCCGATCTCAGGCTCCTATTCTGCTGCCTGTCTTCCCCGATCCGGG
NTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACACAATCTAGGAAGTGCTAAATA
AATACTGGTTCCTTTCCTGTATAAATATTTAGGCTTCTTATCTAGAAGCT
AATGTAAACTACTGAAGTGAGGTATTCTTGCATGACAGTCGTGGTCTACA
TATGTGGCCTTAAACATTTTGCTTTGACTTTACCTCTGTTTCTCATTCTC
TAATGCTGGCCTCATAAGACAATCAACATTCCGGGATAAGAAAGAGAATA
AAGAAGGCCACCGATGCCTATGTCTTCATCCAATGTTTTGTACAGACACC
CTCAGTAAACACTGGCTCTTTTTACTGGCACCCTTATTACATCAAAGAAT
CAAAAGTGCTTCTGCCTAAATTCATGACTGCCTCTACTTTCTATACCTGG
CCATCTAGCTCAGCACCTCTGTATACAGGTTTTATGGTAAATATATACAC
AGCCTTTGCCATGTGTGAGCACTGAGACTTTAAAACAACTCTTTCATGCC
ATGAGTGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAG
GCAGATTTCTGAGTTTGAGGCCAGCCTGGACTACATAGTGAGTGCTAGGA
TAGGACTATCACAGAGAAACCCTGTTCAAAAAAAAACACTCTTTTACTCT
CACCCCTCAATTATNTATTTATTTGCAGTTTATAGGCGTCCAAGGGACAA
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_i15.g1 MSMg01no441_i15.g1 CHROMAT_FILE:
MSMg01no441_i15.g1 PHD_FILE: MSMg01no441_i15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:22 2005
         (292 letters)



>mm_chr8_76944264_76944955
          Length = 692

 Score =  534 bits (276), Expect = e-156
 Identities = 288/292 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttcatccaatgttttgtacagacaccctcagtaaacactggctctttttactggcacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttcatccaatgttttgtacagacaccctcagtaaacactggctctttttactggcacc 260

                                                                       
Query: 61  cttattacatcaaagaatcaaaagtgcttctgcctaaattcatgactgcctctactttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttattacatcaaagaatcaaaagtgcttctgcctaaattcatgactgcctctactttct 320

                                                                       
Query: 121 atacctggccatctagctcagcacctctgtatacaggttttatggtaaatatatacacag 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacctgcccatctagctcagcacctctgtatacaggttttatggtaaatatatacacag 380

                                                                       
Query: 181 cctttgccatgtgtgagcactgagactttaaaacaactctttcatgccatgagtggtggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 381 cctttgccatgtgtgagcactgagactttaaaacaactctttcatgccaggagttgtggt 440

                                                               
Query: 241 gcacgcctttaatcccagcacttgggaggcagaggcaggcagatttctgagt 292
           |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcacacctttaatcccagcacttgggaggcagaggcaggcagatttctgagt 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)