Query= MSMg01no441_j02.b1 MSMg01no441_j02.b1 CHROMAT_FILE:
MSMg01no441_j02.b1 PHD_FILE: MSMg01no441_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:24 2005
(635 letters)
>mm_chr1_112842945_112843979
Length = 1035
Score = 1174 bits (607), Expect = 0.0
Identities = 628/641 (97%), Gaps = 10/641 (1%)
Strand = Plus / Plus
Query: 5 gaattctaaatatttcagtgttgtatgcagtattttttgtatgaaagataatagctttgt 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gaattctaaatatttgagtgttgtatgcagtattttttgtatgaaagataatagctttgt 254
Query: 65 agtctagtgtaacaaatgaaagcacacataaacatgctctctctctctctctctctctct 124
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 255 agtctagtgtaacaaatgaaagcacacataaacattctctctctctctctctctctctct 314
Query: 125 c----------acacacacacacaattttagcccaattccacttgacagtccaagtttga 174
| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ctcacacacacacacacacacacaattttagcccaattccacttgacagtccaagtttga 374
Query: 175 aaaaggctatatttcaagtgtccatgaaactaggaaaaccaaacattgtatacatggaaa 234
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aaaaggctatatttcaactgtccatgaaactaggaaaaccaaacattgtatacatggaaa 434
Query: 235 tgagtaattaatttagccaagacatgaaaaagtaaaagcatcaacttaagtcttagaagt 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tgagtaattaatttagccaagacatgaaaaagtaaaagcatcaacttaagtcttagaagt 494
Query: 295 atgtccaatgttggataaataaggaacacataattattgaactgcctaatagacactagc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 atgtccaatgttggataaataaggaacacataattattgaactgcctaatagacactagc 554
Query: 355 ttgcatagctattaaataactaatttgtagaacttttaaatatattttaccataatttgt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ttgcatagctattaaataactaatttgtagaacttttaaatatattttaccataatttgt 614
Query: 415 tttaaaacgtattgtgcaactaacttgatgttgttttagttaaaggcctatattctaatc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tttaaaacgtattgtgcaactaacttgatgttgttttagttaaaggcctatattctaatc 674
Query: 475 agtgtagaatatgaccactagtttgtaactgctatgttaaaaggtggaaaatcaggaaag 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 agtgtagaatatgaccactagtttgtaactgctatgttaaaaggtggaaaatcaggaaag 734
Query: 535 aatacaatgggatatatattttacaatccatggataactgcacatttttcataaatgaac 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 aatacaatgggatatatattttacaatccatggataactgcacatttttcataaatgaac 794
Query: 595 ttcaaaatatgttggcatattttaaaaacatgactgaagca 635
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ttcaaaatatgttggcatattttaaaaacatgactgaagca 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_j02.g1 MSMg01no441_j02.g1 CHROMAT_FILE:
MSMg01no441_j02.g1 PHD_FILE: MSMg01no441_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:24 2005
(566 letters)
>mm_chr8_13953006_13953971
Length = 966
Score = 1064 bits (550), Expect = 0.0
Identities = 562/566 (99%)
Strand = Plus / Plus
Query: 1 cataaaagaactacttgctacccaggcccacactgcaggccactcctcctcagcagatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataaaagaactacttgctacccaggcccacactgcaggccactcctcctcagcagatgc 260
Query: 61 gcccctcaagatgtcctgacaccctacctcaaaccaccttcagttgcttccagcatctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcccctcaagatgtcctgacaccctacctcaaaccaccttcagttgcttccagcatctag 320
Query: 121 attttgcttcgtttgtaactgaatgaggaaaaatgaatctactgttacactgaattactg 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 attttgcttcgtttgtaactgaatgaggaaaaatgaatctattgttacactgaattactg 380
Query: 181 taaccttcggaagatgcttcttgcgttctgacaaggggagaggtgccacagaggccatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaccttcggaagatgcttcttgcgttctgacaaggggagaggtgccacagaggccatgt 440
Query: 241 tcagatagtcacaacactcatgttgcatgcagagacaagatggggacgtcctaaaatctc 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagatagccacaacactcatgttgcatgcagagacaagatggggacgtcctaaaatctc 500
Query: 301 aagtgactgaggctggcatgaacttagaggagactggcccacaggacagtgtctacagcg 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 aagtgactgaggctggcatgaacttagaggagactggctcacaggacagtgtctacagcg 560
Query: 361 cacacatccattcagcatatatgcacccagtgggtggatgtttccgcagcaaggcaacca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacacatccattcagcatatatgcacccagtgggtggatgtttccgcagcaaggcaacca 620
Query: 421 gatgtcacccggaagccatggtgtgtgtgggtcactgagcacgaaacactagcaactcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatgtcacccggaagccatggtgtgtgtgggtcactgagcacgaaacactagcaactcag 680
Query: 481 tgggttccttccccgggtatgagagggctcaagaattaatggtgcactagtaggcagctg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 tgggttccttccccgggtatgagagggctcaagaattaatggtgcactagtaggcggctg 740
Query: 541 gcgggcttgccaaccataaagcaatg 566
||||||||||||||||||||||||||
Sbjct: 741 gcgggcttgccaaccataaagcaatg 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
