BAC Information

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BAC

Clone NameMSMg01-441K07
Chromosome8 (Build37)
Map Location 92,292,173 - 92,480,642
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC675985, Sall1, LOC100041089, EG625801, EG384862
Downstream geneTox3, LOC100041133, Chd9, LOC100041156, EG626231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441K07.T7 (MSMg01no441_k07.b1)MSMg01-441K07.TJ (MSMg01no441_k07.g1)
ACCAG531477AG531478
length757760
length of high quality
(start - end)
236 (77 - 312)174 (78 - 251)
definitionCHROMAT_FILE: MSMg01no441_k07.b1 PHD_FILE: MSMg01no441_k07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:30 2005CHROMAT_FILE: MSMg01no441_k07.g1 PHD_FILE: MSMg01no441_k07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,292,173 - 92,292,408)(92,480,469 - 92,480,642)
sequence
NGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXATTTTCATATCTATCC
GCGGAATTCAGACCTACTATAACAGCAGGAGCAAGCCACGTGGCTATTTA
GGACTTTGGGAGGCAGGAAAAATGTATCACCTCCCTGGTACTCAAAGAGA
ACCAGATTGTGCTAACTAACACTCGATGTCTACCATGCGCACCCAACTGT
GTTTTTCTTCTTCTCTCAGTCAATTTTCAGAGAGGGAAATGGGGTGGCTG
TATGCATCACACACCCCTGCTCTCAGAGCACATGTCTGCCTAGTAGTAGA
CCATAGGCAACACATTTTTTTTTTTATTATTTCAACCATTGGAATACTAT
CTACCACGGTGATATCTGGCACATTCAATGATTTAAAACAGAAAAGACAG
TCTAAAATGTTGTACCACACACAATATGCCCGTGTAACTATTAATACCCT
AAGCAAATGCCATGCTCCATTTAATCATATTGCGGTGATATGGATTTCCA
GTGTTTGATAGTTCATACTCACGCCTTAATATTGTCGCTCTTGCCTTGAT
TGCCGTTCGTTTCGTCTTTTATATTTTTTTCTTTCTTTTTCTTTTTCTTC
TTTTTATATCTCCCCTCTCTCTCCTTTTTTCCCCCCCTTTTTTCTCCTTT
TTTCTTACCAATCTATTTCTCCACTCATTATCTATTCTTTTTTATTCTCC
CCTCCCCGTTATTCTTCTTTCTTTTTATAACCTCCCCCATTTTCCTCCCT
TTTCAAT
NCCACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTACCTAAAAAATTCCCTTATCGTCTCCACTGCTCA
ATGTCTAGTCCCCCACTGCTTTGCTGACAGGCAGAAAGAGGCTGGACAGG
AACCAGCAAGGCCTGAATGCCCCGGTATAGGAAGTGATGGCTGCCATGTT
TCCCTGCAGCTCGTCGGAGGTGGAATGTCTACACAGATACCCTGTAGAAC
ATCATAATGAGGCATGTCTTTGCAGATTTTACATCTATAGTTTACTTGCA
TATTTTTAATCTCATGGTTATATTTATTGTATTACATTTATATGTAAGTT
TCACTGAGTACATTTACATATTTGCATATATGTAAATGTATACATATAGA
GATGACAGAAGGAAGTACAGACCACTGGTGTGAGGGCTTATGTTTTGGCT
ACGTTGTTTATTTGACTTCAGCATCTTCTTCCTCCGTGAATATATTGCAT
TTGAATTGTGAATTCAGCATCTCTGTTTCGCTCCCGTTTCTTGGGAGGAA
ACACTCATTTACCAAGAGATCACACATGTTCTCACTTTTATGCCCCACAT
GCGACTGATATTTTTTGCCCTCTCTGCCCCCCTCTTCCTCTTGTCCTGCC
CGACTGCCATTATTTTTCTATATTCGCTACTTACCATCATTTTTCTTCAC
CGCTTCTCCCTCCCTCTCCTCCCCGCCCTCCCCCTTCTCCCCTCCTCTTT
ATTTTTCCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_k07.b1 MSMg01no441_k07.b1 CHROMAT_FILE:
MSMg01no441_k07.b1 PHD_FILE: MSMg01no441_k07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:30 2005
         (236 letters)



>mm_chr8_92291973_92292608
          Length = 636

 Score =  441 bits (228), Expect = e-128
 Identities = 234/236 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggagcaagccacgtggctatttaggactttgggaggcaggaaaaatgtatcacctccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggagcaagccacgtggctatttaggactttgggaggcaggaaaaatgtatcacctccct 260

                                                                       
Query: 61  ggtactcaaagagaaccagattgtgctaactaacactcgatgtctaccatgcgcacccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtactcaaagagaaccagattgtgctaactaacactcgatgtctaccatgcgcacccaa 320

                                                                       
Query: 121 ctgtgtttttcttcttctctcagtcaattttcagagagggaaatggggtggctgtatgca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 ctgtgtttttcttcttctctcagtcaattttcagagagggaaatggggtggctggatgca 380

                                                                   
Query: 181 tcacacacccctgctctcagagcacatgtctgcctagtagtagaccataggcaaca 236
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 tcacacacccctgctctcagagcacatgtctgcctagtagtagaccaaaggcaaca 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no441_k07.g1 MSMg01no441_k07.g1 CHROMAT_FILE:
MSMg01no441_k07.g1 PHD_FILE: MSMg01no441_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:30 2005
         (174 letters)



>mm_chr8_92480269_92480842
          Length = 574

 Score =  313 bits (162), Expect = 3e-90
 Identities = 171/174 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccttatcgtctccactgctcaatgtctagtcccccactgctttgctgacaggcagaaa 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tcccttatcatctccactgctcaatgtctagtcccccactgctttgctgacaggcagaaa 315

                                                                       
Query: 61  gaggctggacaggaaccagcaaggcctgaatgccccggtataggaagtgatggctgccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 314 gaggctggacaggaaccagcaaggcctgaatgccccggtataggaagtgctggctgccat 255

                                                                 
Query: 121 gtttccctgcagctcgtcggaggtggaatgtctacacagataccctgtagaaca 174
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gtttccctgcagctcatcggaggtggaatgtctacacagataccctgtagaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)