BAC Information

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BAC

Clone NameMSMg01-441P05
Chromosome8 (Build37)
Map Location 103,310,169 - 103,476,638
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042069, LOC436054, LOC100042078, LOC100042086, LOC100042092, LOC384895
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441P05.T7 (MSMg01no441_p05.b1)MSMg01-441P05.TJ (MSMg01no441_p05.g1)
ACCAG531713AG531714
length778754
length of high quality
(start - end)
443 (72 - 514)491 (84 - 574)
definitionCHROMAT_FILE: MSMg01no441_p05.b1 PHD_FILE: MSMg01no441_p05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:55 2005CHROMAT_FILE: MSMg01no441_p05.g1 PHD_FILE: MSMg01no441_p05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,310,169 - 103,310,611)(103,476,231 - 103,476,638)
sequence
CGCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAATCCGC
GGAATTCTTAATTATTCCATTTGCCTAATGACTGGCAGAAAAGAAATGCA
CATATCTCTTAAATTGAAGCTTTCTTACAAATTTAGGCTAAATTTTGGCT
ACTGGTAGATTTCAGGCCAAGAACTACACTAAAAGGAATTGTCTGTGAAT
ATTGTGTAAAGAAGTCCATGACATTCGGAAGATATATTCACCTTCAGTTT
GAAAGTAAGCCCTGGCAGTTCACATAAATTACAAGCACAGACAAATTATA
TTATCCTCCAGAATTACATTTCTTTCTTTCATTCAAATGTGGAAAAAAAG
TGAAAAATCAGGAATTACTAGATCTCTGGTAGGGAATACTTGATTTGAAA
TTCCCTTTTTAATACCTAGGCAATAGAAATCTGAATGTCTCCTTGAATTC
ATTCAGCAACAAAAAAGCTAATAACTTCCTTATATGGAGCTGAAGCTTCT
CTTTTAGAAATTCATCTGATTTTTTTTTTTCTATTTCACTTTTTTTTCCC
TAAAACTGCCAGATTTCCCCTATTCCCCCCTTGCAAGAAGTATCCAGACT
CATGTTCCTTTATATGCGACTGACCGGGATGTCCACCGCCTCTTACAAAG
AAGTTTGTCCGCCTGTGCTTCTTTTCTTACAATTTTTTTTTGTTTTTTCC
TTTTTTTTCCGTACATCCACCCCTCCCCATTCTGGGATTCTGGTTTTCTT
TCTGCTCCTATACTCTCCCTCCCCCTTG
TTCGATGCTANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCCCAAGGTCTTGCTAAGGAC
GAACTAGGACTGTTGGAACACTGGGAGACGGCTTTAGCTATGTCAGAATT
CAAACTTAAAAGGCACTTATGATAGGACAATATTGAAAGAGAGCACGTGG
ATCCATACACTAGACTAATGTGGGAATGGAACGCGGGAATGAAAAATTAC
TGTATGGGTAGGGAATGCTAGACTCCAGGAGGAGAGCTTCCTTGAAACTC
TTTTGCCTCATGAGTGACTTTTATTTCTCTCGGCTTGTCCAGTTGACTCG
ACCAGAGAGCGTAGCAATTACCACTCAATATTAAAGAAATATGCATGGTT
ATGTAGTCAACGTGTTCTCAAAGATGAGCAGAGAAGAAATTATCCTGTCA
GGGTTAGGAGAACTATTATCCCTCTACCATTAGTATGAAATACCTGGGAA
TTGCCTTAGAAAGAGAACATTTACATTAAGGTTCACTATTAACAGCTGTT
TTCCATCATGGATGAACGCCTTCCTCCGGGGTCCTATCAGGCATTCTCAG
GACTAACAGCAGAGACCATGGAACACTTACCGACTCTAACTTCTATAGCC
AGCTATCAAACAGAAGGTAAGATGTCCGAACCCTGCCCAACTCCTCAAGG
TGAAGAATCTTATTATGGATATTATTTTTACGATTCCTATTCCCCTACCC
TTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_p05.b1 MSMg01no441_p05.b1 CHROMAT_FILE:
MSMg01no441_p05.b1 PHD_FILE: MSMg01no441_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:55 2005
         (443 letters)



>mm_chr8_103309969_103310811
          Length = 843

 Score =  795 bits (411), Expect = 0.0
 Identities = 435/443 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcctaatgactggcagaaaagaaatgcacatatctcttaaattgaagctttcttacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcctaatgactggcagaaaagaaatgcacatatctcttaaattgaagctttcttacaaa 260

                                                                       
Query: 61  tttaggctaaattttggctactggtagatttcaggccaagaactacactaaaaggaattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaggctaaattttggctactggtagatttcaggccaagaactacactaaaaggaattg 320

                                                                       
Query: 121 tctgtgaatattgtgtaaagaagtccatgacattcggaagatatattcaccttcagtttg 180
           ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 tctgtgaatattgtgtacagaagtccatgaaattcggaagatatattcaccttcagtttg 380

                                                                       
Query: 181 aaagtaagccctggcagttcacataaattacaagcacagacaaattatattatcctccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagtaagccctggcagttcacataaattacaagcacagacaaattatattatcctccag 440

                                                                       
Query: 241 aattacatttctttctttcattcaaatgtggaaaaaaagtgaaaaatcaggaattactag 300
           |||||||||||  ||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattacatttcaatcagccattcaaatgtggaaaaaaagtgaaaaatcaggaattactag 500

                                                                       
Query: 301 atctctggtagggaatacttgatttgaaattccctttttaatacctaggcaatagaaatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atctctggtagggaatacttgatttgaaattccctttttaatacctaggcaatagaaatc 560

                                                                       
Query: 361 tgaatgtctccttgaattcattcagcaacaaaaaagctaataacttccttatatggagct 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaatgtctccttgaattcattcagtaacaaaaaagctaataacttccttatatggagct 620

                                  
Query: 421 gaagcttctcttttagaaattca 443
           |||||||||||||||||||||||
Sbjct: 621 gaagcttctcttttagaaattca 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no441_p05.g1 MSMg01no441_p05.g1 CHROMAT_FILE:
MSMg01no441_p05.g1 PHD_FILE: MSMg01no441_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:55 2005
         (491 letters)



>mm_chr8_103475748_103476638
          Length = 891

 Score =  750 bits (388), Expect = 0.0
 Identities = 403/408 (98%)
 Strand = Plus / Minus

                                                                       
Query: 84  ttatgataggacaatattgaaagagagcacgtggatccatacactagactaatgtgggaa 143
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 891 ttatgataggacaatattgaaagagagcacgtggatccatacactagactaacgtgggaa 832

                                                                       
Query: 144 tggaacgcgggaatgaaaaattactgtatgggtagggaatgctagactccaggaggagag 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 tggaacgcgggaatgaaaaattactgtatgggtagggaatgctagactccaggaggagag 772

                                                                       
Query: 204 cttccttgaaactcttttgcctcatgagtgacttttatttctctcggcttgtccagttga 263
           |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||
Sbjct: 771 cttccttgaaactcttttgcctcatgagtgacttttaagcctctcggcttgtccagttga 712

                                                                       
Query: 264 ctcgaccagagagcgtagcaattaccactcaatattaaagaaatatgcatggttatgtag 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ctcgaccagagagcgtagcaattaccactcaatattaaagaaatatgcatggttatgtag 652

                                                                       
Query: 324 tcaacgtgttctcaaagatgagcagagaagaaattatcctgtcagggttaggagaactat 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tcaacgtgttctcaaagatgagcagagaagaaattatcctgtcagggttaggagaactat 592

                                                                       
Query: 384 tatccctctaccattagtatgaaatacctgggaattgccttagaaagagaacatttacat 443
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 591 tatccctctaccattagtatgaaatacctgggaattgccttagaaagagaacatttgcat 532

                                                           
Query: 444 taaggttcactattaacagctgttttccatcatggatgaacgccttcc 491
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 taaggttcactattaacagctgttttccatcatggatgaacgccttcc 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)