BAC Information

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BAC

Clone NameMSMg01-441P09
Chromosome8 (Build37)
Map Location 42,498,576 - 42,499,122
singlet/doubletsinglet
Overlap geneFrg1
Upstream geneZdhhc2, Cnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl, Mtus1, Fgl1, Pcm1, Asah1
Downstream geneLOC100039376, Gm1815, LOC671994, Zfp353, EG620772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441P09.T7 (MSMg01no441_p09.b1)MSMg01-441P09.TJ (MSMg01no441_p09.g1)
ACCAG531721AG531722
length684750
length of high quality
(start - end)
---547 (80 - 626)
definitionCHROMAT_FILE: MSMg01no441_p09.b1 PHD_FILE: MSMg01no441_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:56 2005CHROMAT_FILE: MSMg01no441_p09.g1 PHD_FILE: MSMg01no441_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCAAAAAANNNNTTTNNNNNNNNTTCTAAATTTCNNCGCTATCNACTC
CTATTCAAATAGNACCGCGNAATCCTCATTACCCANATTAAGTTCCAGAG
CACCTGAAGGGTTANNCTCAGAAAATGGTATTCCCTTCTATTTTACCCGT
CCCAGCCTTTCTGGACNCCNCANAAACGATGGGAAGTCAAACCCCATTCC
AAACCTTTAAAAATTAAACTTTAAACCCGGTTTCNNNNTTAACCCCTCTT
NNNCCCCCCCCAAAAGGAGGGGGGGGTTTGAGGTGGGGGGGGTGGGGGTG
GGGGGGGTGGGGGGGTGGGGGGGGGCGGGTGAGTANNAAAATAACCCGCN
GGAAAACATTTTTTTTTCCCCCCCCCCCCCGGAAAAAAAAATTTTNNAAA
AAAAATTTATTTTTTTTTTCCCCCCAAAAAANNNNTTGGGTGTTTTNNNA
AAATCTTCCNCCCCCCCACACCCTNTTTTCTTTTTTTTCTTCCCCCAAAA
AAAAACAAACCCACNCNAAAATNNTAAAAAAAAAAATTTCCTCTTTTTTT
TTTTCTTTTTTCCTNCTCCNNNNNNNNNNNNAATCCTATTTTTTTCTCTT
TTTTTTTTTTTTTTTTTTNTTNNNNANANNNNTNCNCCAATTAAATAAAT
TATATATCTATTCACCTTTCTCGGCCGCGGCGAG
NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAATTGGGGTCAGGATCAG
GGGTAGGTATGTGTCTGCTGACCTGCTGTTTCTTACCATAGGTGAGTAAT
TAATGGTATTAGAATGTGCCAAATTGTTCTAAATGGTGTTGCTGTTTTAA
TGTCCTACCAGGGATAGAAAAATGTTGTCTGCTGCAGGTCCTGGGAAGTA
AGCAGCCTTTCTCTCACACCGCTGCCTTTGGTTTTCTTTACACTGCTTGT
CTGCTGAGCTGGTCTCTAGTTTTCCTCCGACTTGTTAACTGTTTTCTCTC
ATAGTTGCTGCCTTTTAGGTCTTTATTTAGCTTACCCTTATCTCAACATC
TTGAAAGACTTCTGCTCTTCCTTTTGGACACATTCAAGTTTAGAGTTTTC
TTCTTTGCTAACTTTATCACCCACTTCAGGGTGATTGTGTAGTGTGAGGT
AGGTCTCAGAGATTGGGTTTTGCTTCTGTTTTTCCCCAGCCTCCTTTTGA
ATTGTTGTCTTTTGCTATGAAATGGCTACTTAAAAATTAGCTGGGTTTCT
GTATGTCGGTCTCCTTCCTGACTCTTGTTCCACTTATCTGGTTTCTGNCA
GGGTTTGTCTTTATTACTTCATTGCTTTATTCCTCCCACAAGGTTTCCAG
GTCCAGGAATTGAGTTCACCTCCTTCTCGGTTCTTTATTTAAAATTTGTG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_p09.g1 MSMg01no441_p09.g1 CHROMAT_FILE:
MSMg01no441_p09.g1 PHD_FILE: MSMg01no441_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:56 2005
         (547 letters)



>mm_chr8_42498376_42499322
          Length = 947

 Score = 1058 bits (547), Expect = 0.0
 Identities = 547/547 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtaattggggtcaggatcaggggtaggtatgtgtctgctgacctgctgtttcttaccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tgtaattggggtcaggatcaggggtaggtatgtgtctgctgacctgctgtttcttaccat 688

                                                                       
Query: 61  aggtgagtaattaatggtattagaatgtgccaaattgttctaaatggtgttgctgtttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aggtgagtaattaatggtattagaatgtgccaaattgttctaaatggtgttgctgtttta 628

                                                                       
Query: 121 atgtcctaccagggatagaaaaatgttgtctgctgcaggtcctgggaagtaagcagcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 atgtcctaccagggatagaaaaatgttgtctgctgcaggtcctgggaagtaagcagcctt 568

                                                                       
Query: 181 tctctcacaccgctgcctttggttttctttacactgcttgtctgctgagctggtctctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tctctcacaccgctgcctttggttttctttacactgcttgtctgctgagctggtctctag 508

                                                                       
Query: 241 ttttcctccgacttgttaactgttttctctcatagttgctgccttttaggtctttattta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ttttcctccgacttgttaactgttttctctcatagttgctgccttttaggtctttattta 448

                                                                       
Query: 301 gcttacccttatctcaacatcttgaaagacttctgctcttccttttggacacattcaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gcttacccttatctcaacatcttgaaagacttctgctcttccttttggacacattcaagt 388

                                                                       
Query: 361 ttagagttttcttctttgctaactttatcacccacttcagggtgattgtgtagtgtgagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttagagttttcttctttgctaactttatcacccacttcagggtgattgtgtagtgtgagg 328

                                                                       
Query: 421 taggtctcagagattgggttttgcttctgtttttccccagcctccttttgaattgttgtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 taggtctcagagattgggttttgcttctgtttttccccagcctccttttgaattgttgtc 268

                                                                       
Query: 481 ttttgctatgaaatggctacttaaaaattagctgggtttctgtatgtcggtctccttcct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttttgctatgaaatggctacttaaaaattagctgggtttctgtatgtcggtctccttcct 208

                  
Query: 541 gactctt 547
           |||||||
Sbjct: 207 gactctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)