BAC Information

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BAC

Clone NameMSMg01-442C04
Chromosome8 (Build37)
Map Location 121,725,712 - 121,901,446
singlet/doubletdoublet
Overlap geneCdh13, Hsbp1
Upstream genenone
Downstream geneMlycd, Osgin1, Efcbp2, Gm587, Mbtps1, Hsdl1, Lrrc50, Taf1c, EG628061, 4930403J07Rik, Kcng4, Wfdc1, Atp2c2, 4632415K11Rik, Cotl1, BC025816, Usp10, Crispld2, Zdhhc7, 6430548M08Rik, 1700120B06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442C04.T7 (MSMg01no442_c04.b1)MSMg01-442C04.TJ (MSMg01no442_c04.g1)
ACCAG531853AG531854
length770783
length of high quality
(start - end)
268 (74 - 341)241 (77 - 317)
definitionCHROMAT_FILE: MSMg01no442_c04.b1 PHD_FILE: MSMg01no442_c04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:10 2005CHROMAT_FILE: MSMg01no442_c04.g1 PHD_FILE: MSMg01no442_c04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,725,712 - 121,725,979)(121,901,228 - 121,901,446)
sequence
TTTTCCAATXXXXXXXXXXXXXXXXXXXXXXXXXATACCACAGAGGATCC
GCGGAATTCTTTATCTCCCGCTTCGTATGATTGATAGCCCATAGCCTGCT
CTGCCTTCAGAACACATTTCCCTACTGGAAAACTTGTGTAAATGTTAAAG
ATTATTGTCACATTGGAGAAAAACTCTATTAGCTTCTGTTATACATAGGA
GATGCTCCTTTTCCAGCGGTCTTGTGTCATGGCTAATCTTTACACGGATG
CCACATGTCCTCCAAGCTGTCATCCGTGACCCTGTTTCGTGGCCTATTTG
AGTGCTGTGTTGTCTTTATTGATATGAATGTGATGAGTCGAGTCTGCAAG
CATGTACATCTCTTTCTAATGGGTTCATTACACGGTTCCCTTCTTCACGA
TTTTTAGCATATTACGACCGAGCTATCTCACCTCTGCTGTGAATATCTGC
TTTTCTTCTACTTAATTGGTTGAATTCCCAATATTATGCCTTATTTTATT
GTACCAATTTTTGCTCCTTTCCTACTATTTTTTTTATTATATCATTCCCC
CCTTTTTCCTCTCTTTTCTCTCTTTTTTTTTTTTTTATTTCTTCTCTTCC
TCCTCTCCTTTTTCTTCTTTTTTTTTTTTTTTTCTTTCCCTTCCTCCCTT
TTTTTTTCCCCCCTTTTTCTCCCTTTTCTCCCCTCACTCTTTTTTTTTTT
TCTTCACTCTCATACTTTTTTTTTTTTTGCCCGCCCCTCTTTCTTTTTCT
CCTCTTTTCTTTCCTCCCTG
GATGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXGTCTTTGTTCAGTTCTGATTTACAAA
CTGACAGGTTCACATTTCCAGCTGCCGCATGGACTTTCCAGTCATCTTTC
TATTGCTAGATCTTTCCATCCAAACACCAGGGAGTTGGTAACCCTCTCCC
ACCCTCCCCTACCCCCATTCAATAAACATAAACGGCCCCCGGTCCATTGG
GGCTACTGATAGGAGTATGAGTGAGAGGTTCCGTACCGGATCAAAGCAAC
TGCATGAGCTGGGCTATTTTTTTACTCGGTAGGCATAGGCAGGCGGATTT
CTCAGCCTGGCCTACAATGTGAGTTCTAGGACAACCAGGGTTTATACTGA
GAAACCCTGTCTGGAAAAAATTATTCATCCACCCATTCATCCTTCCTAAC
AAACTAACTATATTCCACCTTTTACTATTCCTCTTTCTTTTCTATTTTAT
TTTTTTCTACTTGCCATTTTTATTTTCCTTCCCTTTTTTCTTCCCCTTCT
TCCTCTTCTTGATCTCTTTTTTGCCCTCCTTGTTTTCTTTCTTTCTTTTT
TTCTCATTATTTTTTTCTCTTCCTCACCCCCTTTCTTTCCTCCTTCTCTT
TTCGTTAGGCTTTTTTTTTTTCCCCCACCCTTTTATTATTATTTCCTTAT
CCATTTTTCCCCCTCTTCCTCCTTTTTTCTTTTCCCTCCTTTTCTCCCCC
TCTCCTTTTTCTTCTTTTCTTCTTTCTCCTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_c04.b1 MSMg01no442_c04.b1 CHROMAT_FILE:
MSMg01no442_c04.b1 PHD_FILE: MSMg01no442_c04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:10 2005
         (268 letters)



>mm_chr8_121725512_121726179
          Length = 668

 Score =  487 bits (252), Expect = e-142
 Identities = 264/268 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgtatgattgatagcccatagcctgctctgccttcagaacacatttccctactggaaaac 60
           |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 cgtatgattgatagcccagagcctgctctgctttcagaacacatttccctactggaaaac 260

                                                                       
Query: 61  ttgtgtaaatgttaaagattattgtcacattggagaaaaactctattagcttctgttata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtgtaaatgttaaagattattgtcacattggagaaaaactctattagcttctgttata 320

                                                                       
Query: 121 cataggagatgctccttttccagcggtcttgtgtcatggctaatctttacacggatgcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cataggagatgctccttttccagcggtcttgtgtcatggctaatctttacacggatgcca 380

                                                                       
Query: 181 catgtcctccaagctgtcatccgtgaccctgtttcgtggcctatttgagtgctgtgttgt 240
           |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 381 catgtcctccaagctgtcatccgtgaccctgtttcgtggcctgtatgagtgctgtgttgt 440

                                       
Query: 241 ctttattgatatgaatgtgatgagtcga 268
           ||||||||||||||||||||||||||||
Sbjct: 441 ctttattgatatgaatgtgatgagtcga 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no442_c04.g1 MSMg01no442_c04.g1 CHROMAT_FILE:
MSMg01no442_c04.g1 PHD_FILE: MSMg01no442_c04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:10 2005
         (241 letters)



>mm_chr8_121901014_121901654
          Length = 641

 Score =  362 bits (187), Expect = e-104
 Identities = 211/219 (96%)
 Strand = Plus / Minus

                                                                       
Query: 15  gatttacaaactgacaggttcacatttccagctgccgcatggactttccagtcatctttc 74
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gatttacaaactggcaggttcacatttccagctgccgcatggactttccagtcatctttc 374

                                                                       
Query: 75  tattgctagatctttccatccaaacaccagggagttggtaaccctctcccaccctcccct 134
            ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 373 cattgctagatctttccatccaaacaccggggagttggcaaccctctcccaccctcccct 314

                                                                       
Query: 135 acccccattcaataaacataaacggcccccggtccattggggctactgataggagtatga 194
           |||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||
Sbjct: 313 acccccattcaataaacataaacggccctctgtccactggggctactgataggagtatga 254

                                                  
Query: 195 gtgagaggttccgtaccggatcaaagcaactgcatgagc 233
           |||||||||||| ||||||||||||||||||||||||||
Sbjct: 253 gtgagaggttccataccggatcaaagcaactgcatgagc 215


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)