BAC Information

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BAC

Clone NameMSMg01-442L12
Chromosome8 (Build37)
Map Location 34,475,000 - 34,475,243
singlet/doubletsinglet
Overlap geneWrn
Upstream geneEG546052, LOC100042715, LOC628408, EG628412
Downstream genePurg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442L12.T7 (MSMg01no442_l12.b1)MSMg01-442L12.TJ (MSMg01no442_l12.g1)
ACCAG532297AG532298
length771771
length of high quality
(start - end)
247 (80 - 326)244 (82 - 325)
definitionCHROMAT_FILE: MSMg01no442_l12.b1 PHD_FILE: MSMg01no442_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:00 2005CHROMAT_FILE: MSMg01no442_l12.g1 PHD_FILE: MSMg01no442_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGA
TCCGCGGAATTCTCAGCTTATCCAAACCAAAGGGCTGAGAAGCACATGAA
AAAATGTTCAACACCCTTAATTATCAAGGAAATGCAAATCAAAACAACCC
TGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGT
GACAGCAGATGCTGGCAAGGATTTGGAGAAAGAGACACACTCCTCCATTG
CTGGTGGGATTGCAAGCTGGTACAACCACTCTAGAAGTCAGTCTGGTAGT
TCCTCAGCAAAATTGGACATAGTACTATCATAATATCTAGCAATACCTCT
CCTGGGCATATACCCAGAATATGTTCCAACTTGTAATAAGAACACATGCT
CCACTATGTTCATAACAGCCTTATTTATAATAGCCAGCAGCTGGAAAGAA
CCCAGATGTCCCTCAACAGAAGAATGGATACTGAAAATGTGGTACATTTA
CCCAATGGAGTACTACTCAGCTATTAAAAACAATGAATTCTTGAAACCCT
TGGTCCAATGGATGGTTCTGGAAGGATATTTTCTTTAGCGTTATACCCCA
CCTCTCTTTTAAATCCTTTTGTTTTGTTTCTCCTTTTTTATTGCTCTCTT
TTCTTTTATTCCCATAATACTTTTTTTTTTTTCTTTTTTTTCTCTACGCA
TAGTTCTGGTTTCCGTTTTTTTTACATTTCACTACTTCTTTTATCTCCCT
CTCCTTTTCTTTTTACCCTCG
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGCCTGAGCTATAACAT
GAGACTCTTGAAAAAAAGAGAAAAACACTAAAAGTACAATTATTAATAAC
CAAACAAAGGAACTGGTAGCATGGTTAAATAAAAGGAAAGAAAGACCAAG
AGGAAGAAAATCAATATCCAATTATGAAGAAAGAAAATATTAAAACTTAA
AGATTAATATTAATAAATTATGAAAGAGTTTTTTTAAAAAGTAAAGGCAA
TTACTAAACCTATTTTTAAATAAACTTATGTGTTAGTAAAGTGGAGAAGC
TTCATTTGGAGTCCACCAAGTCTAGAGTGGGTTGTGGATCCTCAGTGGGG
TCTACTGTAATCCTTTTTGACTCTCACTGTGGAGACTGGTGCTTATTGCT
TGATAAGGGCTAGGCCAGTCAGGAGTAACTTGTCAACTCCAAGACTGCTT
TCACTTTACAGTCCACTTTATTTGCGCGCCATGAGCTTCCTTTAGTCCCT
ATAGAGATCTGTACCCTACCCCCCGCATGTCCCCCTTTTCTTCCCTCCCC
TTTCCCCTCTTTTTTCTCTTCTTTTCCCTTCCCCATTTCCCCCCCCACCC
CCATTTTCTCTTTTTTTTTTTTTTTTCCCCCTTTTTACCCCCACTTTTGT
GTTTCCTTTTCCCCCCCCCCCATTCTTCCCTTTTTCTCTGTTATCCCCCA
CCTATTCTCTTTCTCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_l12.g1 MSMg01no442_l12.g1 CHROMAT_FILE:
MSMg01no442_l12.g1 PHD_FILE: MSMg01no442_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:01 2005
         (244 letters)



>mm_chr8_34474892_34475535
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagcctgagctataacatgagactcttgaaaaaaagagaaaaacactaaaagtacaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 acagcctgagctataacatgagactcttgaaaaaaagagaaaaacactaaaagtacaatt 293

                                                                       
Query: 61  attaataaccaaacaaaggaactggtagcatggttaaataaaaggaaagaaagaccaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 attaataaccaaacaaaggaactggtagcatggttaaataaaaggaaagaaagaccaaga 233

                                                                       
Query: 121 ggaagaaaatcaatatccaattatgaagaaagaaaatattaaaacttaaagattaatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 232 ggaagaaaatcaatatccaattatgaagaaagaaaatattaaaacttaaagattaataaa 173

                                                                       
Query: 181 aataaattatgaaagagtttttttaaaaagtaaaggcaattactaaacctatttttaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 aataaattatgaaagagtttttttaaaaagtaaaggcaattactaaacctatttttaaat 113

               
Query: 241 aaac 244
           ||||
Sbjct: 112 aaac 109


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)