BAC Information

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BAC

Clone NameMSMg01-443D22
Chromosome8 (Build37)
Map Location 4,206,882 - 4,207,062
singlet/doubletsinglet
Overlap geneB130050I23Rik
Upstream geneInsr, A430078G23Rik, Arhgef18, Pex11c, 1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g
Downstream geneBC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443D22.T7 (MSMg01no443_d22.b1)MSMg01-443D22.TJ (MSMg01no443_d22.g1)
ACCAG532697AG532698
length569734
length of high quality
(start - end)
327 (96 - 422)181 (78 - 258)
definitionCHROMAT_FILE: MSMg01no443_d22.b1 PHD_FILE: MSMg01no443_d22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:47 2005CHROMAT_FILE: MSMg01no443_d22.g1 PHD_FILE: MSMg01no443_d22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGTTGCCCCNNNNNNGNNAATTAGTCCTCATGTCACTAAACGANNNCAC
ATAGTTCGNCACTCCGCGGNAATCNCNTTCCCTACCAAAAAATTGAGGAT
CAAACTCGGGCTATCAAGCTCGGTGGCAAGTACATGTACTCTCTGAGCCA
CCTCCCAAGTCAAGATTTTCACATCTTAAGACAAGTCACACTGAGTTACC
CAGGTAGTCCTGGATTTTAATATTTGGTCCAGGTTGACCTCAAGCTCACG
CTTGATCCTCTTGCCTCAAGTCTCTCCAATACCTAGGCTCACAGGCATGT
GCCACCATGCTCACCTGAACACTGGCTCTGAAAATGATTGTTTTTTAGCA
TGGATGGACAAACTTCTTTATTGAAACCATTTTTATCTTTGCCCCACCCC
ACCTCTACCACCCTCTGCCCCTCTTGTCTCTGTCACCTAGAGGACTGGAC
CTCAGTCTCCTTGTTTTGAAAAGCTATAACCTCGGCAACTTCTACCAATT
TGAAATCCATGGCCTTCTTTTCCAACAGGCCCCTAAGGGAAGAATTTTTA
TGGGCATTATAACCCCCTC
TTTTTCCGAGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGCCTCTGTAACTCCTGCCAA
CGGAGGGCCAGGTGGAGGAGGCAGCACAGAGGGGCAGGGCCTACTGGCAG
GCCTGCCCTGCATAGCAGTGTTTATCCGTGTTAGACCATATTGTCCAAGC
CCTCCTGAGTTCAAGGGGTGTGTGGGCCAGTTACCTGGAGGGTGTTGCTC
TCCTAACATGGACAAGGGCCGAAAGTGGGGAGGCCCCAGGACTTGTTAAT
AAGCAGGAAGCTTCCTCCTCCTATTTTTTTTCCCTTTGGGACAAGGGAGG
CCCTGCTGGGTGGCGTCCATGAACTACTGCCCTGATTAAGGAGCCCCAAC
TTGCACTGATTTTTATCATCCCATTACCGGTTCTCCGTATTCACCGATCC
TGCATTTCCCGTCTCCCTGCTCTTGTTAAAATTTTGGCTCTCCCGCCCAT
TTTTTGCCTGGTGGCAATTTACATGGGCCCCCCGCCCCCCTTTATTTTTT
CTCCTCCCCCCCTCTTTTGTCTTGTTTTCACTTTCCCCCCCGGCGCCGTT
TAACCCTCCCCTCTCTTACTTTCTCCTCCACATTTCTTTCAAAATTCTCC
CTTTTCTCTTTCCTTAATTTCCACGCCAACTATGTTTCTCTTTTAATTTT
CCCCCCCTCTTTTCCCCGCCTTATATACTATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_d22.g1 MSMg01no443_d22.g1 CHROMAT_FILE:
MSMg01no443_d22.g1 PHD_FILE: MSMg01no443_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:47 2005
         (181 letters)



>mm_chr8_4206682_4207262
          Length = 581

 Score =  335 bits (173), Expect = 1e-96
 Identities = 179/181 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgcctctgtaactcctgccaacggagggccaggtggaggaggcagcacagaggggcag 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgcctctgtaactcctgccaactgagggccaggtggaggaggcagcacagaggggcag 260

                                                                       
Query: 61  ggcctactggcaggcctgccctgcatagcagtgtttatccgtgttagaccatattgtcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcctactggcaggcctgccctgcatagcagtgtttatccgtgttagaccatattgtcca 320

                                                                       
Query: 121 agccctcctgagttcaaggggtgtgtgggccagttacctggagggtgttgctctcctaac 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccctcctgagttcaaggggtgcgtgggccagttacctggagggtgttgctctcctaac 380

            
Query: 181 a 181
           |
Sbjct: 381 a 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space:    99129
Effective search space used:    99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)