BAC Information

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BAC

Clone NameMSMg01-443P09
Chromosome8 (Build37)
Map Location 86,062,814 - 86,063,314
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666564, LOC675800, EG666289, Zfp330, Rnf150, LOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854
Downstream geneOlfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443P09.T7 (MSMg01no443_p09.b1)MSMg01-443P09.TJ (MSMg01no443_p09.g1)
ACCAG533241AG533242
length734775
length of high quality
(start - end)		506 (51 - 556)---
definitionCHROMAT_FILE: MSMg01no443_p09.b1 PHD_FILE: MSMg01no443_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:43 2005CHROMAT_FILE: MSMg01no443_p09.g1 PHD_FILE: MSMg01no443_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTTCTATCTGCCAATTACCAAAAGGTTTGGTGAGGCGTGT
GATTTGAATGAAGCCTAGTTACAAAACACCTATAAATAAAAACATGCATA
AGCTAACTTAAACAAGCAGAGACACGGAAGCACAGCGGTCCTCTTTCCTG
TCCTGTGGGATACACACTTCAGAAGAGCATGGTGAGCAGCTTTGGCTTCT
CAAATGAAACACTGTGAAATATGTAAAGAGTTTGAACTGTGCAGTAGCCA
GGAATAAAATTGTATGAGGGGATTAATGTTATAGTATGGTTTATATGTAA
GAAGATTAATCTGCCATCAGGGGACAATGTGGTGAAGGTATACAGGAAAG
GCAATCACAAGGTGACTTCGAGGGAGCTGAGGGAACTGGTAAAAGTTGGC
CAGAATCCTCTAGAAAGACTGAGCTTCTCTCTGAGGGAGGACAGACTCTC
AGACAAGTACTGAGTTGTAGATAGAATATTCTGTCTTGGATAAGAAGGAA
ACGATGTGCCAAAATTTGTCTTTGGAGCATAATATAAATACTGAACGGTC
ACCATGATAATGGTATGACATGATAGAACTCGCGGGCTCTCCCAAAAAAA
AACGAGGGTATAAAATATGTAGGTACCTGTTATGGAAAAACTACTATTTG
GGAGTTTAAACGTGCCCATAAGGAACAACACCCC

AAGGTGTGTGAGGTGGGAGGCACCGGNNTTCANCAGTTANNNACANAGNC
TCTTCTCCCAAATTCTTTNATCCANNCCANCCCNGNCATNCNNNAANCCA
TTATANCCCNGCTACNAAANAAACCCTGTTTCNNACNCNNCCCCNANNAA
CAAACAACTGGCCCCCCNCCANAATCCATCCCTGCAAACCTAAAACCCCC
TTANTTTNAACCATGCNAATCCCAAAAAAAACCCCCTATTTGGGNCCTTG
CCCCATTTCCCAAAACCCCNCCCCCTACCCCCCNNNNNNAANTTTGTGGT
TTAAAAGGGCAACGGCCAAANNNGAAACCCGCCCCCTTCCCCCCNNNNAC
CCCCCCNCCGGGAAACCCCCCACCCCCCCAAAAAACCCCCCCCCCCCCCA
AAAANCNNTAAANCCCCCCCCCCCCCCACCCCCCTTTTTTNCACTATCTT
TTTTTTTTTTTAATAAACCTCCCCCCCCCAGTTCCCCCCCCCCCCCCTTT
TTTTCCTCCCCCCCCCNNNCNNNNTTCCCCNCCCGNAAAAAACCCCCCCC
CCCCCCCCCCCCCCCCCNNNNNCNNNNNCNNNNNNNNCCCCCCCCCNCCC
CCNCCCTCNNCTTTTNCCGCCCGGGGCTNTNNTTTCCCNNNCCCCCCNNC
CCCCCCCCCCCCCCCCCCCTCCCCNCNNNNCNNNCCCCCCCCCCCCCNCC
CCCNCCTCCCCNCCCCCCCCCNCCCCCCCCCCCCCCCCCCCCTTTTTTCT
CCCTTCCTTAGTGTCTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_p09.b1 MSMg01no443_p09.b1 CHROMAT_FILE:
MSMg01no443_p09.b1 PHD_FILE: MSMg01no443_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:43 2005
         (506 letters)



>mm_chr8_86062610_86063514
          Length = 905

 Score =  948 bits (490), Expect = 0.0
 Identities = 499/502 (99%), Gaps = 1/502 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttctatctgccaattaccaaaaggtttggtgaggcgtgtgatttgaatgaagc 64
           |||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttcta-ctgggaattaccaaaaggtttggtgaggcgtgtgatttgaatgaagc 263

                                                                       
Query: 65  ctagttacaaaacacctataaataaaaacatgcataagctaacttaaacaagcagagaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctagttacaaaacacctataaataaaaacatgcataagctaacttaaacaagcagagaca 323

                                                                       
Query: 125 cggaagcacagcggtcctctttcctgtcctgtgggatacacacttcagaagagcatggtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cggaagcacagcggtcctctttcctgtcctgtgggatacacacttcagaagagcatggtg 383

                                                                       
Query: 185 agcagctttggcttctcaaatgaaacactgtgaaatatgtaaagagtttgaactgtgcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agcagctttggcttctcaaatgaaacactgtgaaatatgtaaagagtttgaactgtgcag 443

                                                                       
Query: 245 tagccaggaataaaattgtatgaggggattaatgttatagtatggtttatatgtaagaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tagccaggaataaaattgtatgaggggattaatgttatagtatggtttatatgtaagaag 503

                                                                       
Query: 305 attaatctgccatcaggggacaatgtggtgaaggtatacaggaaaggcaatcacaaggtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 attaatctgccatcaggggacaatgtggtgaaggtatacaggaaaggcaatcacaaggtg 563

                                                                       
Query: 365 acttcgagggagctgagggaactggtaaaagttggccagaatcctctagaaagactgagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acttcgagggagctgagggaactggtaaaagttggccagaatcctctagaaagactgagc 623

                                                                       
Query: 425 ttctctctgagggaggacagactctcagacaagtactgagttgtagatagaatattctgt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttctctctgagggaggacagactctcagacaagtactgagttgtagatagaatattctgt 683

                                 
Query: 485 cttggataagaaggaaacgatg 506
           ||||||||||||||||||||||
Sbjct: 684 cttggataagaaggaaacgatg 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 905
Length adjustment: 10
Effective length of query: 496
Effective length of database: 895
Effective search space:   443920
Effective search space used:   443920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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