BAC Information

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BAC

Clone NameMSMg01-444I09
Chromosome8 (Build37)
Map Location 109,751,280 - 109,751,448
singlet/doubletsinglet
Overlap genenone
Upstream genePrmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b
Downstream geneLOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444I09.T7 (MSMg01no444_i09.b1)MSMg01-444I09.TJ (MSMg01no444_i09.g1)
ACCAG533670AG533671
length768742
length of high quality
(start - end)
171 (75 - 245)240 (73 - 312)
definitionCHROMAT_FILE: MSMg01no444_i09.b1 PHD_FILE: MSMg01no444_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:27 2005CHROMAT_FILE: MSMg01no444_i09.g1 PHD_FILE: MSMg01no444_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXATAGTACTTACTCGGCGGAAT
TCTTCATATTTTGCATTATTGTGTAAACTCGAAATTGTGCCAAAACAAGA
GCCTCCTAAGTCCTCTGCACCGGGGGAGGGCCAGCAGTGTCCCCTCTTTC
ACAGCAGGTGAAAGCATCTGCTGAGATCAGCTGGCTGCCAGTCTCCTGTG
TGAAGGAGTGGCCTGAGTCTCAGTGCTGAGGTGACAAGTGGCTTATTTAT
ATTATCTGCCAGCAGATGGTTAGGGACCCCTGCTCCACACAAGTGTTGAA
TCGTCCTTGTCCTTTTTTTTTTGCTCCGNCCANCCCTGTTACCACCCAGA
GTCAAACTCTTATTAGCTCTGCGTCATCCTGCTGTCCTTGCCTTGGATTT
GTGGTCCATCTCAGCGGTCGAGCCGTGTCTCCGTCTTCTTATATTTTGAG
TTTCGTCTGCTGATTGGTTTCCCGTTTTACTTCACACACACCTTTCTTGT
TCCCCCAGACTCTAGCATTTTTCTCCCCTTTTTCTCTTTTTTACCCTCCT
GAACCTTTAGGTCATTGCCACTTAATCCGCTTTTCCCCTTTTCGACTTAT
CTCCTTTACTCCCCTTTTCTTACTTTTCTCCACTTACACAAGTTTTCCTC
ATTTTTTTCTCCTCTTCCCTTTAGATTCCCTCTGCCTTTTATTTTATTCA
CACCTCTTTGCTCCTTTTTCCTTTTTTCATTCTCTATTTCCCCCCCCATC
TTCCGCCCCCCCCCCCCT
CCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTACCGCAGAAATCACTCTATCCTGGAACTCACTCTGTAGA
TCAGGCTGGCCTCTGCCTCTGCCTCCCACGTGCTGGGATTAAAGATGTGG
GCTACTATGCCCTGCTCCCTCTCCGCTGTACTTGTGGCTCAATATGAGCA
TTGAGCTTTTTTTTTTTCTTTAAATATTTATTTTATGTATATGAGTACTC
TGTCTCTGTCTTCAGACAGCACCAGAAGAGGGCATCAGATCCCCATATAC
AGATGGTTGTGTGCCTCCTTGTGGTTGCTGGGATTTGAACTCAGGACCTC
TGGAATAGCAGCCAGCGCTCTTAACCCCTGAGCCATCTCTCCCGCCCTGG
ACACTGAGCTTCTGCTCCAGCTGCCAGGTCTGCTTCTTGCTGCAACACCT
TCCTACCATGATGGATTCCCTACCCTCTAGAGCCACAAGCCCAAATTAAT
TCTTTCTTCCATAAGTTGCTTGGGTCAAGCTGTCTTACATCAACAGAAAA
GAAATTGATAACGTTTATTAAACAACTTACAGAGGTAGCTGGTCTGTGTT
GTTCAATACCTTTTATCTTGCTACTCCGGCAATGAAAGTCTATTTTTTTT
TTGCCCGCTCACGGCTAGTCCTGGTCCACTTGGCCATGCTCTATTACCCT
TTTGAGTCCCTCTTATCCCCGTCTTATTTACCCCTTCCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_i09.b1 MSMg01no444_i09.b1 CHROMAT_FILE:
MSMg01no444_i09.b1 PHD_FILE: MSMg01no444_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:27 2005
         (171 letters)



>mm_chr8_109751080_109751650
          Length = 571

 Score =  304 bits (157), Expect = 2e-87
 Identities = 166/169 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaactcgaaattgtgccaaaacaagagcctcctaagtcctctgcaccgggggagggccag 60
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 369 aaactcgaaattgtgccaaaacaagagcctcctaagtcctctgcagagggggagggccag 310

                                                                       
Query: 61  cagtgtcccctctttcacagcaggtgaaagcatctgctgagatcagctggctgccagtct 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 309 cagtgtcccctctttcacagcaggtgaaagcagctgctgagatcagctggctgccagtct 250

                                                            
Query: 121 cctgtgtgaaggagtggcctgagtctcagtgctgaggtgacaagtggct 169
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cctgtgtgaaggagtggcctgagtctcagtgctgaggtgacaagtggct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 571
Length adjustment: 8
Effective length of query: 163
Effective length of database: 563
Effective search space:    91769
Effective search space used:    91769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)