BAC Information

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BAC

Clone NameMSMg01-444K20
Chromosome8 (Build37)
Map Location 16,347,841 - 16,348,080
singlet/doubletsinglet
Overlap geneCsmd1
Upstream geneEG234097, EG665619, LOC634008
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444K20.T7 (MSMg01no444_k20.b1)MSMg01-444K20.TJ (MSMg01no444_k20.g1)
ACCAG533787AG533788
length884730
length of high quality
(start - end)
---243 (74 - 316)
definitionCHROMAT_FILE: MSMg01no444_k20.b1 PHD_FILE: MSMg01no444_k20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:39 2005CHROMAT_FILE: MSMg01no444_k20.g1 PHD_FILE: MSMg01no444_k20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCTTTCTCTGTGGTCATTCGCATAGTCGAGTCTGAACATACGCGCGATG
GGCTATGAGTCCACGACAGTCACCGTGAATGTATCCTGGCCACGCGTTGG
CGAGCCTCAATATAGAAGCCGAGGCGATATATAGATAACTACCTCGTTCC
TGTGCCCAAGTCTTGCCACCCAAGTGACTCACTACCGATCCCGAACTGCT
CACAGGATTCCTAAACGTCCTAGCCCGCTAGGGGCAGGTTACCGCCACCT
ACTATCCTATGGGCATTCGATCCACCGCTTAATGTTCACCACCTTAAATA
CGTGCAGAAGCCCCCCCACTCTTTTTCACCATCACTATATGAACTTCGAG
TAGCATTGTTTTCGGCTTATTCCTATTTTATTCATCTCCCGCTTTTTTGA
CCGATAGGCCTTCTCTTGTTCCGCTTTCATAACTTCCGTCGAGAACGCCC
ATCGTAATTATTTGTTTCGCCGAATAATGCATAGTAGTTGAAACTTTCGC
GCTTATCCTTTTGCGCAGCGCAATGTACAAGCCTGCGTCGGATCGTCTCC
GGGGTATCGATTCTCGCCTTTCGTCCGACGGGACAATCGGAAATATTTGT
GCGAAATATTCGCCCACCCTCGAATGATTTACAGGCCGGTTTCCGGAACG
TAACGAAAAACCGCTATCGCCCGGACTCAAGGGTACGCAAAATTGCGGGT
GGGCATATCGCCGGGCAGTGCGCGGGACTCGAAAACAATTGACCTCGCCC
CAACCTGCGCCCCACCCCTGTTCGTGAACCGTGTGTATGGCTTCCACGGT
CACACAAACACAACAACTATGGTCAGAGGGCGGCCAGGCCATTACGCCGG
TGACATTTACTGCGCACTTAGCGGGCGCAAACAG
NCCCGATGATGTGTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTGGGGACACAGAACCATGTTTCCCG
TGTACTCATTTGTATACAGAGAGTCTGTATATCTATCCATCTGTGCACTG
AGCCAGTGAGTTACAGAAAAGAGCTCCATATAGCAGGGTTGAGGACCAGT
GTCACACCTCACACAGGATGCACATTAAATGCAGTTTCATCTCTGCTAAT
CTTTGTCCTATTTCTTTCCAATAAGAATGGAGGATGCAATGTCAATGTCT
CACTCGATGCTCATATTTTATTTCACAAAAAACGATGCCAAGTCGCATAG
CACAATGAATATAGGGACTTGAGTCTATTGTGCTGTTGAAAGATTAAAGG
AAGTAGAAACAATGACTCCAAAAGCAAAAGAAGGCATCATTGTCTCTTTC
TTCATCTTGAAGCTAGAATGATAAGGCAACTGAAGCCATAAACTGTAAAG
CCAAAGAAAACGGCATGCTTTTGTGATAAAAAGTATTTCAATCACCCCAT
CTTTTCTCAAGGNTTTATTATTTTATTTTCCAAATCACTGGGGATAACTT
TGGAAATCTAATATTAGTGCGAAGTCTTGGCTGAATATTAATAACTCATA
CTCGACTTGGGGTAAAAGGCTACTTTTATGAGAAAGTAATGCAAAGACTT
GCCCCTCTGCTATCTTAGACACTGTCATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_k20.g1 MSMg01no444_k20.g1 CHROMAT_FILE:
MSMg01no444_k20.g1 PHD_FILE: MSMg01no444_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:39 2005
         (243 letters)



>mm_chr8_16347641_16348283
          Length = 643

 Score =  456 bits (236), Expect = e-133
 Identities = 239/240 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actggggacacagaaccatgtttcccgtgtactcatttgtatacagagagtctgtatatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actggggacacagaaccatgtttcccgtgtactcatttgtatacagagagtctgtatatc 260

                                                                       
Query: 61  tatccatctgtgcactgagccagtgagttacagaaaagagctccatatagcagggttgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatccatctgtgcactgagccagtgagttacagaaaagagctccatatagcagggttgag 320

                                                                       
Query: 121 gaccagtgtcacacctcacacaggatgcacattaaatgcagtttcatctctgctaatctt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 gaccagtgtcacacctcacacaggatgcacattaaatgcagtttcatctctgctaagctt 380

                                                                       
Query: 181 tgtcctatttctttccaataagaatggaggatgcaatgtcaatgtctcactcgatgctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcctatttctttccaataagaatggaggatgcaatgtcaatgtctcactcgatgctca 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)