BAC Information

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BAC

Clone NameMSMg01-445E07
Chromosome8 (Build37)
Map Location 24,929,156 - 24,929,469
singlet/doubletsinglet
Overlap geneZmat4
Upstream geneMyst3, LOC100042253, Ank1, Nkx6-3, Agpat6, Gins4, Golga7, Sfrp1, LOC100040931
Downstream gene1810011O10Rik, Indol1, Indo, Adam18, Adam3, Adam5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445E07.T7 (MSMg01no445_e07.b1)MSMg01-445E07.TJ (MSMg01no445_e07.g1)
ACCAG534239AG534240
length735753
length of high quality
(start - end)
316 (314 - 629)433 (67 - 499)
definitionCHROMAT_FILE: MSMg01no445_e07.b1 PHD_FILE: MSMg01no445_e07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:24 2005CHROMAT_FILE: MSMg01no445_e07.g1 PHD_FILE: MSMg01no445_e07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTCACAC
ACTTTCAAAATAATAATAATCTCCTGTTCTATGTGACTTTTCTTTTAAGT
GTGTCTGGTACCAAGACAAAGCTAATAGACAAATTATCCCTGACCGCCAG
CCTATTTTGCTCTACATTGCCACATATCAAAAGGAATGGTTCCTATTGTG
AGGAGGTAACAGGTCCGCACACTGCTCGCTCACACATGTACTCATGGAGC
TTCGGCAGGGCTTCCAGAGTGACATGCTTAAACATTCACTTGTTTGATAT
CTATTATATTCTTTGTGCCAAGGCTGATCAACGCTGCCTGTGAGCAGAAG
GTACAGAAATACCACTAGGGGCTCTGTACAAATAGCCGGGGGCCATACGG
TAACTGTTTCTAGAAGCCTCCCTTCTCTTCTGGCCAGGCTGAGGAGTTTG
GTATCAGTCAAGGAATGATGAGGTGTGCTTGTGCCTTTGAGCAAAGCATT
GCTGTACAATTACCCAATACCACCTTCTTCAGTTATTTTATGTTCTTCTA
AAAGGAATGGTATTGAGCACTGTAATGCTTCCTCTTGGATGGTGTAATTC
CTTGCCAATTACTTAGGGCATCTTTGAAGGACATGTTTTATACCCAAGTG
TCTCTCAGAAGCACTTAGTTTTGTACCTGGAACCTATCCCACACTAGTTT
GTACTAATTGCGCTTTGAATGCCTTTTCTCTCTGN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGGACAGCTAGGGCTACACAGAGAAACCCTGTC
TCGAAAAACCAAAACAAAAAAACCCCCCAAAACCCAAATAACCCCCCCCC
AAAAAAACCCAACCCAACCAACCAACCAAACAAACAAACCAAGTTACAAT
GAGACCAGGTACAAACATTCATATCAAGACAAGACTAGGCAACCCAGAAG
AAGGCAAAGGATTCTGAGAGCTGGTGAAAGAGTCAGAGACACCCCCATTC
CCACTGTTAGGAGTCCCATAAGAACACCGAGCTACACAACGGTAACACTT
GCCTAACCTTGTTCATAGCAGCTTTGTTCATCATTGCTAGAAACTAAAAA
TGACTTAGATGTTCCTCGACAGAAAAATGGATAAAGAAAATGAGGTATGC
CTACACAGTGGCGTTATTACTCAGCTATTTTTTAAAAAATGACATCATAG
AATGGTGGCAAAGGATGGAACTAGAAAAAAAAATCATCCTAAGTGAGGCA
GCCGAGGCCCAGAAAGACAAACAAGATGTTTATTTACTTATAAATGGATA
TTCGCTGTTAAGTATAATCATGCTACAATCCAGAGACCTAAAGAGGGCTA
GGGACAAGGAGGGCTCTATGGGGGAAAGGGCGCTGTGAAAAAAAACCTGG
ATATCCTTGGGAAGGGGAAATAAAAAAAATTTTTTGTGATATTCTGTACG
CGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_e07.b1 MSMg01no445_e07.b1 CHROMAT_FILE:
MSMg01no445_e07.b1 PHD_FILE: MSMg01no445_e07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:24 2005
         (316 letters)



>mm_chr8_24928954_24929669
          Length = 716

 Score =  576 bits (298), Expect = e-169
 Identities = 310/314 (98%)
 Strand = Plus / Minus

                                                                       
Query: 3   tgccaaggctgatcaacgctgcctgtgagcagaaggtacagaaataccactaggggctct 62
           |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 516 tgccaaggctgatcaacgctgcctgtgagcagaagggacagaaatacaactaggggctct 457

                                                                       
Query: 63  gtacaaatagccgggggccatacggtaactgtttctagaagcctcccttctcttctggcc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gtacaaatagccgggggccatacggtaactgtttctagaagcctcccttctcttctggcc 397

                                                                       
Query: 123 aggctgaggagtttggtatcagtcaaggaatgatgaggtgtgcttgtgcctttgagcaaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aggctgaggagtttggtatcagtcaaggaatgatgaggtgtgcttgtgcctttgagcaaa 337

                                                                       
Query: 183 gcattgctgtacaattacccaataccaccttcttcagttattttatgttcttctaaaagg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gcattgctgtacaattacccaataccaccttcttcagttattttatgttcttctaaaagg 277

                                                                       
Query: 243 aatggtattgagcactgtaatgcttcctcttggatggtgtaattccttgccaattactta 302
           |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 276 aatggtattgagcactgtaatgcttcctcttggatgttgtagttccttgccaattactta 217

                         
Query: 303 gggcatctttgaag 316
           ||||||||||||||
Sbjct: 216 gggcatctttgaag 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)